Array 1 215653-211874 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWWX01000003.1 Rubrobacter radiotolerans DSM 5868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 215652 37 100.0 36 ..................................... TCCTCTTCCAGGGGGCGGGGCCTTCTCTGAGAGGAG 215579 37 100.0 35 ..................................... CGCGACCTTCGCCGCCTCCGACCGGCGGCCCTCGT 215507 37 100.0 37 ..................................... GGCTTCGCCGGAGCGCCAAAGGGCGATGGGCGAGAAG 215433 37 100.0 38 ..................................... TAACCGCCTCGTAGACGGCCCGGAAGCCTGCGCCCCGC 215358 37 100.0 36 ..................................... CCCGATGCGATAGGCTCTTCGGGCGGTAGGCGGGCC 215285 37 100.0 36 ..................................... ACCGAGGAGTTGTTGGCGAAGTGAAAGACCGGCACG 215212 37 100.0 36 ..................................... CAACGTCGTGGCCCCGTCCGGCGCCGCCCGCGTGGT 215139 37 100.0 37 ..................................... TCCTCGGCGCACGCCGCGAGCTTCAGGCCGTCCCTGA 215065 37 100.0 38 ..................................... CCCCTTCGGCGAACTTCGAGGGATCTCCGATGGGCGCC 214990 37 100.0 36 ..................................... TTCATCACGCACCGCACGAGGTTCCCGGGAACCCGC 214917 37 100.0 35 ..................................... TAGGCAAGGTGGCGACCGGGCTCTTCCGGCTCTCG 214845 37 100.0 37 ..................................... CTCTCCATAACCGTATCCGCGCACATCAAGGCATCCG 214771 37 100.0 35 ..................................... CCTTCAAGGCAAACAGAGGGTTATCCGTGAGATCC 214699 37 100.0 36 ..................................... CAGTTGCAGGACCGGAGGCCGGGCGGGTGATCGTGT 214626 37 100.0 37 ..................................... TTGCTCAGGTCCATAAGCCGCGAGAGCCTGTCAGCGA 214552 37 100.0 43 ..................................... TAGGCCCGGTACGTCCCGCTCCCGGTACATATTGGTGCGGATA 214472 37 100.0 39 ..................................... TCACGATAGAAACGCAGCTCAAAACGGTAGACGGGAAGA 214396 37 100.0 35 ..................................... TCCTCCCCTCGGTTCCCACCCAACCCGAACCTCTC 214324 37 100.0 37 ..................................... GTCAGGCGACTGATGCCCCATGCGAAGAGGGCACCAG 214250 37 100.0 36 ..................................... CGGGACGCCTCGTTGCTCGGGTCAGCAAGCACTACG 214177 37 100.0 40 ..................................... AGGATGCCGACGAGCCCGGAACCTACCTCCTCCGGGATAA 214100 37 100.0 37 ..................................... CAGATTCAGGAAATCTTGGGACGGGTTTTCATCCGGG 214026 37 100.0 36 ..................................... CGAGAAAGGCGACGATGCCGACGGCGGCTATTGCGG 213953 37 100.0 37 ..................................... GAACCCCTCGGCGGTCAGTTCCGAGCCGTCGATCGCC 213879 37 100.0 37 ..................................... TCACCCCGTACTCCGTCAGGCGGTAGCGGACCGTGAG 213805 37 100.0 34 ..................................... GCTACCTCGACCGCAAAGGCGTTCCGAATGCGGA 213734 37 100.0 34 ..................................... ATTCGGGTGAAGTCCCGCCGCGCCAGCCGGCGCA 213663 37 100.0 34 ..................................... CGGAGATCTCCGAGGCGTCGGGCTCGGGGCCGTG 213592 37 100.0 36 ..................................... GTTCGTCGTCTGCCGCTAGCTGTAGCATGTTCAAAT 213519 37 100.0 39 ..................................... TGTAGCTTTTTCCGTCCGCAGCCCGCCGTCCCGCAACCG 213443 37 100.0 35 ..................................... CCTGAATGGTTGATCGAAGGGTTTCTTGCGCAGAA 213371 37 100.0 36 ..................................... CGTTGACGATCTCGACCAGCGCGAACCGGAGAAGAC 213298 37 100.0 36 ..................................... CGGGTTGTGCCCTCTCTCATGGCTCGTGGCGGCCTG 213225 37 100.0 35 ..................................... GTAGGAGAACCCGACGCGTTCCAAGAACCCGTTTC 213153 37 100.0 35 ..................................... CGTTGTGAAGCGAGAACTGAATGTCCTCACGGATA 213081 37 100.0 36 ..................................... CTCTTCGCCGTCGTAGACGTAGAGGTTGCCGCTTAC 213008 37 100.0 36 ..................................... TGGGGGGCGCGTCGAGCGAGGGACAGTGGCGCAATG 212935 37 100.0 37 ..................................... TAGCGTTGCCGCTAGCCATCTGGCCCCACGTGCCTAT 212861 37 100.0 38 ..................................... AGCGGGTCTTTGGTGTACTGGACGTTTCCCCACGACGT 212786 37 100.0 37 ..................................... GTACGTCCCGTTACGCTGATCCCGCCGGAAAACCTGT 212712 37 100.0 36 ..................................... ACGAGGCCATTTCACGTTCTAGCTCGTCGGCGTCAT 212639 37 100.0 35 ..................................... CGCGCCTTATGCCGTGAGCGAGCGGGCGAAAAACC 212567 37 100.0 37 ..................................... CGGCAGAACGAGCGGTACGCACAGACCAGTTAGGCCC 212493 37 100.0 37 ..................................... TATAACGAATGTCAGCTAGCAATCTACCGTCTTCCCC 212419 37 97.3 35 .............................G....... CGACCAGACCGTCAATCCGGACTAGCAGGTTTTGA 212347 37 100.0 35 ..................................... GACGGGATCGCCAACCGTCAGCGGTCCGGGGGCGT 212275 37 100.0 37 ..................................... ACCTGTTGCGCGGGGAAAGCGTCAAGCCGCTGGCCGT 212201 37 100.0 35 ..................................... CCTCTATCTCCCAGACCGTCTCGGCGGTGGACGAG 212129 37 100.0 36 ..................................... ATACCGTCGAGCACGGTGTTTCGGGGCTGGACTCTT 212056 37 100.0 34 ..................................... TCGGACGGGAGATGCGCCCCGGCGGGAGGTTCGT 211985 37 100.0 38 ..................................... CCCGACCCCGGCCGTAGCGGTCTAGAGAGGCGTTTATG 211910 37 94.6 0 .........T..........................C | ========== ====== ====== ====== ===================================== =========================================== ================== 52 37 99.8 36 GTTGCAGACCATCTCCCGCTAGATAGGGAACTGAAAG # Left flank : AAGTCGATCTTCGCGGGAGAACTGTGCATCTTGTAGAGGTTCTTCGTCTTTGTTATCCCGAACCCGGCCTCGCGCAAGATCCCCAGCCAGCGGCGGATCGTCCGCTCGTCGCGCCGGATCCCTTCGTCCGCAAGAGCCTGCTCTAGCTTTCTCCTCGAAGCGGGTCCCTCGGACAGAACCCTAAGGAGGATCAGAGTCCCCAAAGACGCCTCCAAGAGTCCCCCTTTCGCAAACCGCTGTAGCTAACTGTAGCAACCCGGTTCCCTGCAGCCTTCGACAACCTGCCGGGATAGACGTATCGCCTGCAAAACCTCGCAAAAACCACCTTCGCAAGCCCCGGGCCCACCGAGGCAGAAAGCCCGTTTGCGAACAATCGCCGAGCGCAGCACCCTATGCTAGCATGCGTCTTACACCCTCGATCCGCTGAGAAGCGGATCTTGACCCTTGAAAACCACCTCGAACCAGGTGGAAGATACGGCTTACAATGCCTTACATGCTCG # Right flank : CTCACCGCTCCCCCCGCGAAGGGTTCTTCGGCGAGGGTCCGGCTACGGGAGCTCCCCGGCCCACTCCCGGTCGGCGATGAGCCGCGCCCAGCCGAGCGGACTCACGTCCAGACCGGCGAGGATGCCAACGAGGGGGATAAGCGCCGCGAGAGCGAGGGTCGGAAAGAGCATCAGCCAGTCGGTCTCGAAGCGGGTGCCGGGCCGCTTCTCCTGCCGCCCTTCCTGCAAAGAGCCGTCAGGGGGCTTGCCGAAAAATGAGTTGTAGAGGATGGGCAGGAAGTAGACCGCGTTCAGCACGGTGCTCGCCACGAGCACCCCGATCGCCCAGCTCTGACCGGCCTGCATCGCGCCCACGCCGAGGTACCACTTGCTTATAAAGCCTGCCATCGGCGGGAGACCGATCATGCCGAGCGCCGCCACGGTGAACGCCCCCATCGTCCACGGCAGCCGCCGGCCGACGCCGCCCATCTTGCTTACGTGCTTTATCCCCACGGTCTCCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGACCATCTCCCGCTAGATAGGGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 1147129-1149856 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWWX01000004.1 Rubrobacter radiotolerans DSM 5868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1147129 37 100.0 34 ..................................... CGTCGCTCGCTGCGGCGGTCGGCTTCGAGCGGCT 1147200 37 100.0 36 ..................................... AGGAGCTGACGCCGGACGAGCTGGCGCGGGTGCGGG 1147273 37 100.0 35 ..................................... TTTGAGATCGTACACGTAAGCGCTATCAAGGCCCA 1147345 37 100.0 37 ..................................... TACCTCTGATGAGGGATACCTAGTGGAACAGGAGACC 1147419 37 100.0 38 ..................................... GGCGCTCAGGCTGACGGTCCTCGGGTGCGTGCTCGCCG 1147494 37 100.0 35 ..................................... GAGCTGATCGCCTTTCAGCGCGGTGTCTCCTACGA 1147566 37 100.0 36 ..................................... GGCATGAGACCGTCGAGGGAGAGCGTCGAGCTTGCG 1147639 37 100.0 35 ..................................... TCCTATCTTGATGGTAACGGTACCCCTGAGAGGGT 1147711 37 100.0 37 ..................................... TTTGCGTCGAGGATGGTCTCGGCGTGGTTCACCCGGA 1147785 37 100.0 35 ..................................... AGGGGAGGGGGTGAACTCAGTTTCAGCCGACGAAG 1147857 37 100.0 37 ..................................... TTCCTTGTTGGTCGGGACCGCCCGGCGGGGGCGCGTG 1147931 37 100.0 36 ..................................... GGCCAGCGGGCCGGTCCCGCGATGGCCGCGCTCGTG 1148004 37 100.0 36 ..................................... AGGTACTGTATCGCCACCTGCGCCGCGCCGCTCGTG 1148077 37 100.0 35 ..................................... GTAGACCGGCACGGCAACGAGGTCCGCTCTCAGGC 1148149 37 100.0 33 ..................................... ATCTCGACCCTGCGGACCGCCACGTCCGGCAGG 1148219 37 100.0 36 ..................................... GACGGGGAGCTTGTGCAGGCCGCCATAGAGCGCGGC 1148292 37 100.0 35 ..................................... GTCCTCGCCGGGCTGATGATGGCGATCCGCTACCT 1148364 37 100.0 36 ..................................... CCGCCGAACCACGGCGTAAGCTCTTCGGCTGTCGCC 1148437 37 100.0 35 ..................................... CGGGACGGCTCGCTGTGGTCCACACAAAAGACATG 1148509 37 100.0 35 ..................................... CGGGGTAAAGACGCCGCCGCGCGCCATGAACTGCG 1148581 37 100.0 38 ..................................... ACGAACTCCTCATACACCCACTCGTGCCCTACGCCGCC 1148656 37 100.0 37 ..................................... GAGATAGAGCCGTTCGCGTGCTCGGTCCTGCGCAAGC 1148730 37 100.0 38 ..................................... CACACTGAGTTCATAGACCGTTTCACCTACTACGGGAT 1148805 37 100.0 35 ..................................... CTCGTGAAAGGGCCGTCTATTCCAGGCCAAAAAAC 1148877 37 100.0 37 ..................................... TTCGTAAACCCTGAGAAGGACGTGTGGCTTTGCCGGG 1148951 37 100.0 36 ..................................... CCGAGCGGGGCGACGCTTACGTTCGCCTACATGGAC 1149024 37 100.0 36 ..................................... CCTCAAGCACCCGGCAGTGAACACCGCGGCCTCGAT 1149097 37 100.0 34 ..................................... TCCACCACGCCGGGGATGGACGCGTCGCCGGTCC 1149168 37 100.0 35 ..................................... TCTACGACATGAGGCGGCCCCGGGAGTAGTGCGGG 1149240 37 100.0 36 ..................................... ATCTCGACCGCGAGAGCTGCACGTGTCCGGACTACG 1149313 37 97.3 35 ....................................C CCCAGGTAGAGTGTTCGCCGGCGTCCTCCCTCCTT 1149385 37 97.3 36 ....................................C AATGATGGTCATGGAGAACACTCCCGAAGAGCGCGG 1149458 37 97.3 35 ....................................C AGGACGTTTATGAGGGTCCCCTGACCGCGTGGTGT 1149530 37 97.3 36 ....................................C TTCGACCTCAAAGTCCCGGACCGCGGGGTGTGGACC 1149603 37 97.3 35 ....................................C GTAGACGACGCTCGCGTCTTCCTTGTGCCTGCACT 1149675 37 97.3 36 ....................................C TGTAGCGTCTTTGCGGTCCTCTCAAGCATCGAGAGT 1149748 37 97.3 35 ....................................C GTGCTGGCGGCGGCCGGGCTTATGATGGCGATCCG 1149820 37 94.6 0 ...................C................C | ========== ====== ====== ====== ===================================== ====================================== ================== 38 37 99.4 36 GTTGCGCCCGGCTTTCGAGTCGGGCGAGGATTGGAAA # Left flank : ACGGTCCTTGAACGTCCTTGTAACCTATGACGTAAACACCGAGACAAAGGCCGGACGAAGGCGTCTGAGACAGGTAGCCACGGTTTGTAAGGACTACGGTCAAAGGGTGCAGTTCTCCGTCTTTGAGTGCCGGGTGGAGGAAGCTGCCTACGAGGAGATGAGGCACCGGCTGATGAGGACCCTTAACCCGAAAGAAGACAGCCTCCGCATCTACCGCCTGCCTTTTCCAAGAGAGAAGCACGTCGAGGTCTACGGTCTCGACCGCTACACCTCCTTCGACGACCCACTAGTTTTCTGATCCCGACCTGCACCCGAACTCCCGATACGCGAACCCCGAGCGATGCCGAAACCCCCGGAGGTCCGCGCGCCGAAGAAACACCCGGAAAATACACAAAACCTATTCACCTTACGAAAAGAGTCAGCTTTAGACGGTCAAAGAGCCGCAGGGTCCGCGCAAAAACACCCGAGAACCGCGTAGATAAAGCGCGTATGATCGAGCG # Right flank : CGAACGGGTCTCCGCCGCCGTCCGGGTCTCTGTTGTTCTCGGAGAGGCGTCCGAATCGGTCAAGCCGGACGTCTCTCCGGGTCGTTAGAGAGCGTAGAGGTCGGTGAACTTCTCTTCCAGGTATTCGAGGTAGGGAGCGGCGGTGAGGGGCCGGCCGGTTGCGCGGGGGATCAGGTCCTCCGGGTCGTAGCGGCTGCCGTGGCGGTAGACGTGCTCTTCCATCCAGCCTCTTAAGGTCTCGAAGCGTCCGGTGGCGGTCTCGGTAGGTATTTCGGGGTGGTCTTCCAGCGCGGCCTGGTAGAGCTGCACGGAGAGCACGTTCCCCAAGGTGTAGGTCGGGAAGTAGCCGAAGAGCCCGGCCGACCAGTGGACGTCCTGAAGGACTCCGAGGGCGTCGTTCTCCGGGACGAGGCCGAGGTAGCGCTCCATCCTCTCGTTCCACGCGTCGGGGAGGTCGGAGACGGAGAGCGTGCCTTCGATCAGCGCGACCTCAAGCTCGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGCCCGGCTTTCGAGTCGGGCGAGGATTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.50,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //