Array 1 27901-27229 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXOO01000014.1 Enterococcus raffinosus strain BIOML-A1 scaffold14_size116662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 27900 29 96.6 36 ....G........................ CACAGGATTGGTCTTGATGCTTGTTTTGAAACAAAA 27835 29 96.6 35 ....G........................ AATTCTCCATCGATTCGAATATAGCGGGGTTCTCT 27771 29 100.0 36 ............................. GTTGATGTTCCAAATGAGGCATATCATGGAAGCGAT 27706 29 100.0 36 ............................. GCTGCTAGGTCCAACCCTACTTACTCAGCTGTAATT 27641 29 100.0 36 ............................. ACAAAGAGCGGTCTTGATTATTTCCCTCTTGATGTT 27576 29 100.0 35 ............................. ATTTCAAAAACTATAAAAGTGAATGATAGAAACTA 27512 29 96.6 36 ...A......................... ACAGCAGTAGAAGAGAAACTCATTGATATCAAGTTC 27447 29 96.6 35 ...A......................... CAAGTAATTGTTCCAAGGATCGGAATTTTAACAAG 27383 29 96.6 34 ....G........................ GTCATTGCCGTAGAGAAAGTATTTCCTGGGGCTT 27320 28 93.1 36 ......T.-.................... TTCCCTGACGCTTCAACACCTACGCCTAGCCCAGGC 27256 28 79.3 0 ..............C.A..-....G..CG | ========== ====== ====== ====== ============================= ==================================== ================== 11 29 95.9 36 ATCTAAATCTAAAATAGTGGAATGTAAAT # Left flank : AAAGGCAAATCTTGCTGCTTTTCACTTAACAAACTATATTCTTCTCGAAGTTGAGCAAGTAGATATAGATGATTTAGAAGGAGAGTTGTATGAAGTGTCTGCAGAATGTCGCTACGTTTGGGAAGCGATCCTTGAGAAAGCGACCATACAAGAAAAAGAGACAATGTTTACTTGGTTTAAAAATCAGCTTAAACATTCTAACTATGGGTTAAGTTATAGTGAAATTGAACAAATTTGTGAGGAATATTTTTAAGGGATAGAGTTTATGAGAGGGTAGGAGTGGATTCTGCTGATAAATCAAATATTCATCAAGAATTTCTAGTAAAAAGCTTAGTACAAGTGAACCAATCACAATTAAATTGACGCTATTTTTTTTGGGGGATCTGTCGACCTCAAAAAATCAGAAATTTCTGTAGTTGCGACTGCAGCATGAAAATGTTGAATTCTAAGGATTTTCTGTTAAGAATACTGTTATTTTTGTTGAGTGATGATGTAATAAA # Right flank : CAAATTATGTTATCACACAACCAATTCACCCAGAAAATTTCTCCAATTCCAAAGCACTAACCTCATAAAAAATCTACAGCCACCATCGCAAAAACACTTTTACCAGCTGGAGAGTGTTTTTTTGTCTCTTTATTTATTCCTAAACTCTGAAACTTTCATCCGAAACGTGGGTGATCTTTGCTAAAATTAAGAATAAAACCATTATTTTTATAAGGAGAAGACCGATGCAGGAGAAAATAAAGGTATTGATCATTGATGATGATCAAGAGCTGTGCTCGATTATTGAACGGTATTTGACGCGTGCTGAGTATGAGGCGGCGTTTGCTCATACGGGTGCGGGCGGATTGAAAATGGCCTTAACAGGGGAGTATCACTTGATCGTATTGGATATTATGCTGCCGCAAATTGACGGGTTGAGCATTCTAACAGAGATTCGCAAGGAGAGTGTGGTGCCGGTCTTGATGTTGACAGCAAAGAACGAGGAGGCGGATAAGATTCGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTAAATCTAAAATAGTGGAATGTAAAT # Alternate repeat : ATCTGAATCTAAAATAGTGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 30535-29581 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXOO01000014.1 Enterococcus raffinosus strain BIOML-A1 scaffold14_size116662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 30534 30 100.0 34 .............................. GTCTTCGTGCTGCTGAACCTGTGCTTCTAACTCC 30470 30 100.0 36 .............................. CAAGCCAATTCCGACATTGTTTCTGTTGCAAAAAGC 30404 30 100.0 38 .............................. GCATTTGATTATGCAAAGGTAAATCGCTTATTGCAAAT 30336 30 100.0 34 .............................. TTTGATAGTTTAGGTTATTTATTAGAAACAAATA 30272 30 100.0 36 .............................. ATTGCTCGCCCAGATGTTAAAAAGGCATTTGGACTT 30206 30 100.0 36 .............................. TTGGCACACGACAGGCGATAGACCTGATGGAGCAAA 30140 30 100.0 37 .............................. GTTAGTTCTCTAACCATTTGATCAATGGTCCACATTT 30073 30 100.0 36 .............................. GATCGAAAACAGTTATTAGCTTTTCAAATTACCCAG 30007 30 100.0 36 .............................. AAAGCTGTATTGACACCCCCTGTTAAAGCGCCACCT 29941 30 100.0 37 .............................. GCGATTACAGAAGTTGTCGATACTGACAATGAAGAAA 29874 30 100.0 36 .............................. CCTTGCAAGTAACAACTGAAAAACTAAAAGGAGCTG 29808 30 100.0 37 .............................. CCCACATGGTCGCTAAAAATACAAACAATATCCCCCG 29741 30 96.7 36 .......C...................... GAGCGCCGAAGACGAGTACCAACTTGATCCGCCATT 29675 30 100.0 36 .............................. TTCATATCCCGAAGGTCATGCTCTGCTTCTCTCATT 29609 29 90.0 0 ......................-.A...T. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.1 36 GTTCAAATCTAAAAATAGTGGAATGTAAAT # Left flank : TATGAACCTTTCAAAATTTGGTGGTGAAAATAATGTATGTCATTTTAGTTTATGATATTTCTTTAGAAGAAAAAGGCGCTCGTGTTTTGAACCGAGTATTTAAAATTTGTAAAAAATACCTAAGTCATGTGCAAAAATCCGTGTTTGAAGGGGAGATCACTCCTGCAAAGCTGAAAAAATTAGAACAAGAACTAAAAGAGTACGTTCGCGAAGACTTGGATTCAGTTTTAATCTTCAAAAATTCAAATAAGAAGTGGTTAAAAAAGGAATACATCGGAATTGACGGATCAGAACTAGTTTCGAATTTCTTTTAAGTTTTAAATCTGTCGATAGAGAATACCTTAAAAAACCGGTAGTTACGACAGACGATAGAGAATGTTGTGAATATAAGGTTCTTTTTGTTATCCAGTGTTATTTAATTTTAAAAAGGAAGTCATTTCTATGAGGTCGACAGAAATGAGTGAAAGAAGCCCTCTATTTCAATGTATAATAGTTGTGGG # Right flank : TTGGGTAACTAGAAAAATTCCAACTGCGAGTTAGATATCTAAAATAAGAAATTAATTTAAGAGGTAATTGAATATAAAAAAGCATAGTACATTATTGAATTTAAGAGGGTGAGAAGAGATGAAAATCTATACGATTCAACGGAGAGATTTTCTGACATATACTGATTCACAAGGATTTATAATTCCTAAAAGAGATCCAGAATACTCTATCTTTACGGATGACGAAGAAGGGGAAAATTGTCTGTGAGCATTAGAATGGATGAAAAGGCAATTTATAAAACGGATGGACATACCTTTAGATCGTGATTTAATCTGGGTTTGGCCGGATATCTATGCGTATCTTTCAGAAAAAAATGACATTGATTTTTCGAGACATGCTCTTTTCACCTTTGAAGTCCCTGCAGCTTACTACAAAAAAATGATTTTATGGTCCAATTTTATTAGTTGGCATGAGGTCTTGAACCGGTTATGGGAAGGAGTCGCAGATGAGGACGAACGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTAAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //