Array 1 72642-74760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAEP010000015.1 Clostridium saccharobutylicum strain DJ025 NODE_15_length_86952_cov_38.847137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 72642 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 72708 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 72772 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 72838 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 72904 30 100.0 35 .............................. AGTATAAATACGTTTCATTCTAATAATAGTTACGT 72969 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 73036 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 73101 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 73165 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 73231 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 73296 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 73361 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 73427 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 73492 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 73556 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 73622 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 73688 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 73753 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 73818 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 73882 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 73948 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 74013 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 74078 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 74144 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 74209 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 74275 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 74339 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 74406 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 74471 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 74537 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 74601 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 74667 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 74731 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : TTTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 259723-259895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAEP010000005.1 Clostridium saccharobutylicum strain DJ025 NODE_5_length_262104_cov_42.341209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 259723 35 100.0 34 ................................... TGATAGTGCATTTTTGGGTTGTGTTGGTTTAACG 259792 35 97.1 34 .....................G............. GGCTTCTGCATTTACTTACTGTATGGGATTAACG 259861 35 94.3 0 ...........T...G................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 97.1 34 TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Left flank : CAGCAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTATGGAAGTTCCCTTGATGTAACAACAGATGCAGGACAAGCACCAGGAATAAACAGTGTTTCAGTAACTCCAGCAACTTCAAGTGTAGAGCAAGGTCATACTGAACAATTGACAGCAACAGTAGATGCAACAGGAGGAGCAGATCAAAGTGTAACTTGGTCAAGCAGTGATACAAATAATAAAGTAACAGTAGATGCAAATGGTTTAGTATCAGTAGCAGCAGATGCACAGCCAGGAGACTATACAATAACAGCTACATCAACAGTAGATGGAACTAAGAAAGGAACAGCAACATTAACAGTACATGGATTTAAATTTGCATTAAATGGAAATGAGTGTCAAATAACTGGGTATACAGGGACAAGTACAGACATTACAATACCATCTCAAATTGGTGGGAAGAGTGTAACAAGTATAGGTAATTATGCATTTAATGATTGTATTAACTTAATA # Right flank : GGACTTCTGCATTTAGTTATATTAATAATGATGCAATATTCTATGTACCTGATTTGGCTAGAGCAGGATATGTTCAGTCATATAAGACAAATAGTAATAATATACAAATTATTTTGCCATCAGTTCCTTTAACGTTAGGTCAAAAAACAGCAACAACAGCAACAGTATCGTTTCCAGCACAAACAGGAGCGACTTCAGTAAAGCTGCAACAATCGGCAGATGGAGGAACTACTTGGAGTGATGCAGCAACAGGAGCGTTAGATGCTTCATCAACAAGTGCAACTGTAACAGGATTAACAGTAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTACGGAAGTTCCCTTGATGTAACAACGGATACAGCGGCAACGACAGCATACACAGTAGCAGCGGCGGCAGCAAGTTCATCACCAACAGCAGGAGTAGATAACGTAGTTACATTAACTGTGAAGGATTCAACTGGCAGCACAGATACAACCTTCACT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 157682-158823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAEP010000007.1 Clostridium saccharobutylicum strain DJ025 NODE_7_length_227516_cov_40.894860, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 157682 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 157748 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 157814 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 157879 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 157944 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 158010 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 158074 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 158139 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 158205 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 158270 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 158336 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 158402 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 158467 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 158532 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 158597 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 158662 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 158728 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 158794 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : TATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //