Array 1 4784117-4784927 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUE01000001.1 Serratia marcescens strain MGH136 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4784117 28 100.0 32 ............................ AAGCCGCAACAATTGAATGCCTAAAAAACAAT 4784177 28 100.0 32 ............................ CGGTGCAGCGCAGATCGTGGTCTTCTCATACA 4784237 28 100.0 32 ............................ GACGAATTTTCCGTGCGGCCACTCGCCGAGCA 4784297 28 100.0 32 ............................ AAATCAAGGCGACAATACCGATTACTAAAACA 4784357 28 96.4 32 ........T................... TTCGCATTGGTCTACGGCCTCGACCTGGAGGA 4784417 28 100.0 32 ............................ GGCGCCAGAGCATACATGCAAAGACGCCCCAA 4784477 28 100.0 32 ............................ CTTGGTTCTCGACTCAACGGAAAGAAAATTAG 4784537 28 100.0 32 ............................ AATCCGTATTAAACCCCTCTTCATGCAACAGC 4784597 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 4784657 28 92.9 31 .........T...T.............. TAGCTGGCGGGTAGTGATTTCGCCGGTATCG 4784716 28 92.9 32 .............T............G. CTGGGCGGCGCGCATGCGTTGGTAGTAGATGA 4784776 28 92.9 33 ..T..A...................... CCGACTGCGGCTACGCCTTGTCGTGACCACTCC 4784837 28 100.0 32 ............................ TCCTCCTCCGGCTCGTACTCGGTCGAATTGTA 4784897 28 96.4 0 ....................A....... | A,A,G [4784917,4784920,4784923] ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTTTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACTAAACAGGGAACCTATAATTCCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGCGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGAAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4793408-4794695 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUE01000001.1 Serratia marcescens strain MGH136 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4793408 28 100.0 32 ............................ ATCATCGGCTTCGAATGCTTCAATGGCTCCAT 4793468 28 100.0 32 ............................ TTGCGCCACATCCACATTGACAGCGTCGAATA 4793528 28 100.0 32 ............................ ATCATTTTTAATGCCGAGGGCGGGCCGGATGA 4793588 28 100.0 32 ............................ ACGAGAGCTTGATAATGGCTTCATCATCGTCC 4793648 28 100.0 32 ............................ GCCGCCATTTTCAGCTTATTCATCATCACGTC 4793708 28 100.0 32 ............................ ATGTTCGAATCCGAGGAACTTGAATACATAGC 4793768 28 100.0 32 ............................ TCCCTAGCGCTGTCACCGACGAACTGGAACGG 4793828 28 100.0 32 ............................ ATGCCAACACATTCCGAACTGGTCAGCTTCAC 4793888 28 100.0 32 ............................ TCAAGTGGGCCAACACTTGTCTGCCGGTTGAT 4793948 28 100.0 32 ............................ ATGCAGATGGTGATCCAGTTGAGAGGCATCCA 4794008 28 100.0 32 ............................ AGAAAGCGCAAAGGAGAAATGCGAATTAGAGT 4794068 28 100.0 32 ............................ ACATTCAGCCCGAAGTGCCGATCGCATCTATC 4794128 28 100.0 32 ............................ TCGAAAACAAGGGATTGCGCATCCGAACTGAT 4794188 28 96.4 32 .C.......................... TGTACCGCCGGTGCCGCCAACAGAGGCGACGC 4794248 28 100.0 32 ............................ ACGGGACTCATGGCTTCAACCAAGGGGGCCAG 4794308 28 100.0 32 ............................ CTTGCGGCCACACAGCGGACATTCCCCCTTAA 4794368 28 100.0 32 ............................ TGACACCCTGCAGCAGCGCCAGCGTGAGCTGT 4794428 28 100.0 32 ............................ AGTGGCAAGCAATGCGCGCTAAACTTTCTGCT 4794488 28 100.0 32 ............................ TTGAATAATACGTTTAAGGATTAAAAGATGAA 4794548 28 92.9 33 ...........T.C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 4794609 28 92.9 32 ..G........T................ CCGCGCTTCGATAGCGGCAAGTGTGGCACCAG 4794669 27 75.0 0 T.........AT.C......-..T...T | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCAAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACATTTTCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGTGTTTTTAGTTTTTATGGGTTGAGTGCGTCCGCTACGGTACCTTGGTTTTAACCCTTTTTTTTCGTTTAGAGGTAACACATTGATTTTGTTGCCTCTGAGCGGTATCTGAAAAATTAGGGTTAAGCCGAGGGATTTGCCTATTATTCTTTAATAATCAGTTTGTTAGAGACTATTTTGTTCA # Right flank : TAGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTTTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGTTCCCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGGAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGTCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //