Array 1 239180-239387 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVS01000011.1 Pseudomonas cichorii strain s-2-2-1 sequence11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 239180 28 100.0 32 ............................ AGTGAAATCTGATCAGGCATACATTCGCACGA 239240 28 100.0 32 ............................ TGGATACTTGAGGAAGTGGCCCGCCATCACGT 239300 28 100.0 32 ............................ ATGGCTTTATGACGTGGCCGACGAAATCCACG 239360 28 75.0 0 ............A.......TC..ACTC | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCACATAGCAAAACACTCAAGCGGTTGCAAAGCTTGAGGTGAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCCGGGTTTTGGTGATTGCCGGCCTGTAGGAGCGCGCTTGCCCGCGACGACTGTCGCCCTGCCAATGAAAATGCATTGCCTGTACGAACGTCGCGGGCAAGCGCGCTCCTACTTCAATCGCAGCTACCTGAGTAGAAGCGAATTCATTCGCGAAAACGGCATTCCAGACAATACATGTCCTTTGAATGTACCGGCCTATCGCGAATGAATTCGCATACAGGTCCGGCAACAAACCACGACTTCAAGCACCTTCTTTTTTTCAGACTTCGTCGCCCCTTTAAAATCAACAAGTTACGGACCCCTCAAAAAAGAGGGTAAAACGGTCCCAAGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATAAGGCAAGGTGTCTA # Right flank : CCACTTCATAACCGTCAAATCCTACGTCCCCACGCACTCCCGCCCTACAACCACCGACTCCCCATTACCTCCCCCAAACTGAATCCCCTCATTTAACCCACCCAGCTCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCATCAGCGACCGGGTTTGGCGACCTGGTTTAAAGATAAATTCCTCCCCATCGCAAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCGTGTACATCCGCCTTCGAAGCCACCCTCTTCCTCCGCCACAGCCGCATGCTGCGCGCCATGTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCCCGCTTGAT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12621-12353 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVS01000024.1 Pseudomonas cichorii strain s-2-2-1 sequence24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12620 28 100.0 32 ............................ ATATTGACCGATGACCTGATTTATCGGCGTGA 12560 28 100.0 32 ............................ ATTTCGGTTGCAACTGCTTGAATGCGCGAGTG 12500 28 100.0 32 ............................ GTCGCGCAGACCCGAGGGGTGCCCAACGGGCA 12440 28 100.0 32 ............................ AGGCCAAGGCGGGATCTACGGCGGTATCCGGC 12380 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CGGTATAGCGGACCTCTGTCGGCCCTGCTTTTCTGAGCTGACTATACGGCAGTGAAGTAGACACTTTGCTGGATAACCTTTCGTTTTCAAAGAAAAATATGCGCTTGCGGTCGTTCAACCCCTCTTTTTCGTCGGTTCTGTAAGTGGTTGATTTTAAAAGGGTGCATGGTGGGTGAAAAAAAGAGGGTCAGGATCGGCAATGGGGCTGCCCTGTGAGAACCAGTATTACCTGCTGTGTGTCTTGTCGCGGGCAAGCCCCCTCCTACGGGAGTAGCCCGACACGGTATCGAAGGTAGTTCATCTTGTGGGAGGGGCCTTGGCCGCGACATTGCCCATACAGAAGTGGGCCAGGAATGACCCCTTTCTTGACCCTCTTTTTTTCACCGAAGATTCGTTCTTTAAAAAATCAATGACTTATAAAACTCGGTAAAAAAAGGGGTAAAACGGCTACTGGTGCGGATTTCTCTTTGAAAACGGAAGGTTATCTAGCAGAGTGTCTA # Right flank : AGCTGATACCGCACTGCATTGTCGCGGGCAAGCCCCCTCCCACGAAAGTACATCCGATAGATATCTATCGCTTGAAGCACGTCTTCGCGACTGAAGTCGCCACACAAGCCAATCCATTCGCGAAATGCATTCAAACCCAACCCTGCACAAACCTTCTAGACTTCCCATCCCCCCATGGGCGATAACACTCGTCCATATCCCCTTGTTTGCCCATAAGCCTGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCCCATGCCTATGATCCCCACTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAGGGGGTTCAGCAGTTTCATTGCCGGCAGCAACGTTATGCCAGTACGCCGGGTCAGGTGTTCATGTTGGAGCCGGGTGAGATTCATGATGGGGATGCGCCCAGCGCCGAGGGTTTCACGTATCGGACGTTGTATCTCGATC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13064-13571 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVS01000024.1 Pseudomonas cichorii strain s-2-2-1 sequence24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13064 28 100.0 32 ............................ AGCAGGGCCGACAGAGGTCCGCTATACCGGCA 13124 28 100.0 32 ............................ AATGAGCAAGTGGCGCAAATGACCGTCACCTC 13184 28 100.0 32 ............................ AAATTCATCACCATCAAGCAGGGCGAAAAGCC 13244 28 100.0 32 ............................ CACCGACATTGCCATCATTCCTTCCAGTTCAA 13304 28 100.0 32 ............................ CAAACAAGAACGCCAAACACCACGAACACTAT 13364 28 96.4 32 ................G........... GCAATCATGAAAAGTCGTGACAAGGTCTTCGC 13424 28 96.4 32 ................G........... ATGTCGCCACCTTCCCAGTCGTAGAGGTCTAC 13484 28 82.1 31 A...C......C..G.G........... TACGACCCGGTCATTAATGGTCATCTGCTCT 13543 28 78.6 0 GA.........A.C..G.......T... | A [13545] ========== ====== ====== ====== ============================ ================================ ================== 9 28 94.8 32 CTTCACTGCCGTATAGTCAGCTCAGAAA # Left flank : CGCCGATAAATCAGGTCATCGGTCAATATTTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTCTGCTAGATAACCTTCCGTTTTCAAAGAGAAATCCGCACCAGTAGCCGTTTTACCCCTTTTTTTACCGAGTTTTATAAGTCATTGATTTTTTAAAGAACGAATCTTCGGTGAAAAAAAGAGGGTCAAGAAAGGGGTCATTCCTGGCCCACTTCTGTATGGGCAATGTCGCGGCCAAGGCCCCTCCCACAAGATGAACTACCTTCGATACCGTGTCGGGCTACTCCCGTAGGAGGGGGCTTGCCCGCGACAAGACACACAGCAGGTAATACTGGTTCTCACAGGGCAGCCCCATTGCCGATCCTGACCCTCTTTTTTTCACCCACCATGCACCCTTTTAAAATCAACCACTTACAGAACCGACGAAAAAGAGGGGTTGAACGACCGCAAGCGCATATTTTTCTTTGAAAACGAAAGGTTATCCAGCAAAGTGTCTA # Right flank : AACAATCAATCCAACCGCCCAATAACCCCACAAGCAATTGATTTAAATAGACTTTAATCCCCACCTGTAGGAGCGCGCTTGCCCGCGACAACCATTCTGTAATCCCCTCCTTACAAGAACCGCAGACCGATCTTTCTGACTAGCCACCACCCACACCCTCAAAAAACATAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCTTTCTCCGGCCAAGTGCCATCACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCACTCCAAGCGCGCGAATATTTATTACCTGCAGCATTGCCGGGTATTGGTAAATGGCGGTCGGGTCGAGTATGTGACCGATTCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACCGGTACTTCAGTGACTCAGGCGGCGATGCGGGAGCTGGCCAAGGCAGGCGTGCTGGTCGGTTTTTGCGGCGGTGGCG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGTCAGCTCAGAAA # Alternate repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 23294-22546 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVS01000024.1 Pseudomonas cichorii strain s-2-2-1 sequence24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23293 28 100.0 32 ............................ ATCAGACGTTCTGCATGTCGTCGCCATAGCTC 23233 28 100.0 32 ............................ GCCGCCAATGCAACCTGTTGGTTCGGCAGGCG 23173 28 100.0 33 ............................ AGACGACGGGGGCCTGAGCACGGTGGCCTTTAT 23112 28 100.0 32 ............................ GCAACAGATGAAACGCTCGATATCCCGCTTCG 23052 28 100.0 32 ............................ GAAAAGGACGCAGTAAAATGACAATGCCAAGC 22992 28 100.0 32 ............................ ATTTGTTCATTTTCAAAAAGTGATGTGACTCG 22932 28 100.0 32 ............................ TTTCCTCTTGAGGTCGTCCTGCTACTGGCAGA 22872 28 100.0 32 ............................ ACCGTGCGGCTTCCACACAGCGGACTCGTCAT 22812 28 100.0 32 ............................ ATCGACACCTGTGCAGGATACGACGGTTACGA 22752 28 100.0 32 ............................ AGTCGCAGATCAGCAGGAGCGTTTGTGCCGTT 22692 28 100.0 32 ............................ AGCTATCGATAGTGTCAGGCAAGCCCTGCCAA 22632 28 96.4 32 ............G............... TGGCATCGTCTGGCAGTGTCGCGGCGTCCTGC 22572 27 92.9 0 .....................-..A... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CGAAGCTGGCCTCACCATGAATCTGATAGGCCTTTACCCAACGACGCAACAGGGTCGGGTCCATCTGAAATTGAGCAGCAATGTGACGAAAGCCTCGGCCTCGCTCAAGAAAGGCAGTGATGGCGGATAGCTTGAACTGCGTTGTGTACTTGCTCATGAAAACACCCCAAAGGTTGGATGGGTGTCCAACTTTTGGGGCGCACTTCACAACCTTGTGGGAGGGGCCTTGGCCGCGACAGCTTCACACGGGATATGTCAGGACATGGAGCTTTTCCGGGCTGTCATGTCGCTGGGGGCGACATCAGAAAGCATGTCGATGCCCCACAGCTTGCGAACATCCATCCAATGGCCAGAAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGGTAAAACGGCTGCTGAGGCATATTTTTCTTTGAAAACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : AACCAAAGCCCTTGTAGTCCTACCTCACCTACAAGGGCTTCAGTTCATCGCCAACAGAACATCAGAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCTTCCTGGGCGCTGCTCTGTATCGGTCCATGCCGGATGAACAGCAGGAAGGTCTGGCCACTGGTACGGCTGCGCATCTGGACAAAGGGCAGGTTGCTGCGTTTTGCGGCGCTGTCGGGGATGCGTTCGCGGGCCTGTTCTTCCGTGAGGTCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACTTGCACGCGGTTGACGCTCCGATGTTGCGCATCAGTGGGCACCGGGCTCAGTTCGCCTACTCGCACATGATCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGTGCACTGCCATGCAGGCGCAGGCGGTCGCCCAGGCCGATAACCTTGCCGCCAATCGCGGGAAAGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //