Array 1 3618101-3619593 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022062.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain FDAARGOS_312 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3618101 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3618162 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3618223 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3618284 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3618345 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3618406 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3618467 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3618528 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3618589 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3618650 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3618711 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3618772 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3618833 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3618894 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3618955 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3619016 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3619078 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3619139 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3619200 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3619261 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3619322 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3619383 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3619444 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3619505 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3619566 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3635726-3637568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022062.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain FDAARGOS_312 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3635726 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3635787 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3635848 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3635909 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3635970 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3636032 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3636093 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3636154 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3636215 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3636276 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3636337 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3636398 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3636459 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3636520 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3636581 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3636642 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3636703 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3636764 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3636825 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3636887 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3636990 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3637051 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3637112 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3637173 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3637234 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3637295 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3637356 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3637417 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3637478 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3637539 29 96.6 0 A............................ | A [3637565] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //