Array 1 1491969-1491701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040021.1 Salinivibrio kushneri strain AL184 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1491968 28 96.4 32 .............T.............. TGACTTGTTCGCTGCTCAGTCGGTGCTCAATG 1491908 28 100.0 32 ............................ AACCAAGTCAGCAATCGACCGAGCAGTTAAAG 1491848 28 100.0 32 ............................ ACAGTGAGAGATTCGCAGGGGCGCGGCATCAA 1491788 28 96.4 32 .............T.............. GTTTGGCGTTTGTGCCGGCTCTGGTGTGCGGT 1491728 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAACTGGACGATCTGTTACCCCGACCGTATGTTGCCGCGTTTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGGTGGTCTGATATTAGTTTGAGCCACTTCGAATGTTGGTCGCAAGATGTAGGTGTGCCGTGGCAAATGATCAAACCGCATCTGTTGGATACGATCAACTTGGCGAGAGATATCTGGCCAAATCAACTTGTGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTACGTAATCATTGGAAAGCCCTGCACAAGGACTTCACCATCGATTCGTAACCCAACGGAGAACTAAGCCGGCATCTTCTTACCCTTATTTTTTAGCTATTCAAAAATAAGCAATAAATACAGAGCGTTACGGAAAGCGATTTTTAACAAGGGTAAAAGGCGATTTTTATCCTAACGGCCTGTTGTAACAGATGATTGTTAGGTTATTCTATA # Right flank : AAGCTTTGCAGGTGTTCCGCTGCTTTGAGCTTTCCTCCTTACCTCTATTTCTCTTACTGTTGATGCCTGTCTGGGTTTTTCATAGAAATGACTAATTTGAAATACCTCTAGGTGATTAAGCTTTATGCCCTGACTTTAATCGTTGAATATTTTCTATCGATCAATCAAAAACTAATCGACGGGGAGACTACTCCTGTCTAGTTCTTTTTAACCGGTGGCAAGAATCTATTCTACGATAAGAAGATAGCGATTTTTGGTCGATGTTGTCTGTTGTTGACTGGCAGGAGTTGGGTATGAATATCAATAACACCATGAAGTTAGTGTTTTTTATAATTGGGGCAGGGATTGTCGTTAGTTTTATAACGATTATTCAACTCAACGGCCTAATGAATAAAGTCGATGAGATGGCTCAGGTGCGATATGAATCGTATCAAACGGCTGATGAATTAAGGCAAAGCTCTGATGACTTGACCCGCTTAGGAAGAACGTATGTGGTGACG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1495381-1494934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040021.1 Salinivibrio kushneri strain AL184 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1495380 28 100.0 33 ............................ TTGACCTCGGCGTCGCTGTCTACCGTGACATAG 1495319 28 100.0 30 ............................ CATGTCTGTGGGTAAACTGTGTTTCAGTGT 1495261 28 100.0 32 ............................ TCGATTTGCTGGTAGGTGGGGCCTGTTACTAG 1495201 28 100.0 32 ............................ ACACAGGTAATCATGGGCGTCCTGGGTTGTGG 1495141 28 100.0 32 ............................ ATACCGGACGGGCCAGGCCGTAAACCGTGCCC 1495081 28 100.0 32 ............................ GTTCGTGCCATTTTTTCGCGCCCGAAGCGGTG 1495021 28 100.0 32 ............................ GTCGTACGTTTTCATAAACCACGGATCGACAA 1494961 28 82.1 0 A....................G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCGCGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCATAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTGCTGGTGGCCAATAGTACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATCCTGTTACCCTTGTTTTTGGGATATTTAAAAATAAACAATAAATACAGATAGTTACGGAAAGCCATTTTTAGCAAGGGTAAAAGATGATATCTATCCTAACGGCCTGTTGTTACTGACGATTATTACGCTATTCTAT # Right flank : ACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTAATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCCTCAATGTCGGATGGCGCAGTGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGCACAGGCAGCTTATGAAGAGAACGAGATCTCGTTGGGTTACGTGTTCATTTACCGTCGCTAGAGTCGATTCGGCGGTGCACCAATGATTTTTAAATCCGCTTTTCTACGCTTTTTCATCGTCGCGTAGAAATTCTCGTGCGAGCTAATATTAAGCAGGTAGAGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //