Array 1 173047-174234 **** Predicted by CRISPRDetect 2.4 *** >NZ_OANP03000011.1 Pectobacterium parvum strain s0421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173047 29 100.0 32 ............................. GAAGAATATTTCGGCCGTGGACAAGTAAACAT 173108 29 100.0 32 ............................. CCGTTTAATCCTGATGGCATCACGCCATTCAG 173169 29 100.0 32 ............................. ACATCAAACACACCGCCAGGCATTGGCTGAGC 173230 29 100.0 32 ............................. TTGTAAACCATAGCCGATGCAACACATCCGAG 173291 29 100.0 32 ............................. CCATTTATTTATAACCTTAGCCAGAACCCTTG 173352 29 100.0 32 ............................. AAATTTTAAACGTTACATTCATGGAGGATGAA 173413 29 100.0 32 ............................. GGGTGGCTGACACCACCGATCCTGATAAGTAC 173474 29 100.0 32 ............................. AAATTCGCAATGGTGGCGCGGAAATAGCAGAA 173535 29 100.0 32 ............................. TAGGCAAGCACATAGGCGTCAGAAGCCTTATC 173596 29 100.0 32 ............................. TCACGCGCCCGCTGATTTAAAAACATAGAAAT 173657 29 100.0 32 ............................. ATGGGTATCCCCTGGTTCCAGCTGAAAACAAT 173718 29 100.0 32 ............................. GATAAGAAAATTTATCTAGTTAACATTTTTGT 173779 29 100.0 32 ............................. CGCGTAATAATTTGGGTTTGGGTGGACTGGCA 173840 29 100.0 32 ............................. GCTGGCGATCGGGGCTGGATAGAGTCCAGCGA 173901 29 100.0 32 ............................. GGCGCTTTTAATAACTACTTATCTGCAATGGC 173962 29 100.0 32 ............................. GTGACTATGATTTATTTATTATTTATCTTAGC 174023 29 100.0 32 ............................. TATCTCGCCGTGTTGTTGAATTGAATTTTGCC 174084 29 100.0 32 ............................. CTCGGGATGAGAGCGCTTATGTCGTTCAGCTA 174145 29 96.6 32 ................A............ AATGACTACCTTACTAAAACGGCAACAGCTAA 174206 29 89.7 0 ............TT.............T. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGTATTACGCCACCGCTCCCGCCGGATGATGCCCAGCCACCGGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGCCTGCGCGGCAGGCTGGCGGTGTGGTTATTGGAAATCCGCGCAGGCGTGTATGTCGGTGACACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCATGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTCCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTATTATAAAACAACTCTCTATCTTTAGA # Right flank : GATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTTGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGATAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCGCCTCTCGTAAGGATTATGAGGATGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75798-76184 **** Predicted by CRISPRDetect 2.4 *** >NZ_OANP03000016.1 Pectobacterium parvum strain s0421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75798 27 85.7 32 T.........AT..-............. ATAATCGACCTGAACCTTTGTTTCCTTCGTTT TA,G,T [75801,75804,75810] 75861 28 100.0 32 ............................ AGTAACAACTAACACAGAACAATTGATAGTTG 75921 28 100.0 32 ............................ AAAGGCATAGGAGGGTTTGTTGTCGGGAGATT 75981 28 100.0 32 ............................ AGGTAATGCAAAGCCGCTATGCGCCCTGGATT 76041 28 96.4 32 .............T.............. CGAAGGGGCCGGGACGAGACAGCTTGCTGGCT 76101 28 89.3 29 ...........T.T...T.......... CATTGCGTAGTGCCCATAACAACACAGCG 76158 27 89.3 0 ...........T.........-....T. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGCTCTTGTTCTGCGACAGAATCTGGCTAATCAGCGTGCTGAGTCCGGGTAGATCTGCCACGGCGACTTTTAACAGATAATCGGCATCACCCGTGGTTTTATAGGCGTCGATGATGGCGTCCACTTCCCCCAGCATCTGGTGAAAGCGCTCAACGTATTCGCTGGTGTGGTTGATCAGTCGCACTTCAATCAACCCCAGACATTCCAGCCCGACCGCGTTCGGCGACAGGCGGGCATGATAGCCAAGAATCATCTGTGCCTGCTCCAGTGCGATGCGACGGCGGGAACACTGCGAGGCGGAAAGCCCAACCAGATCGCTCAGTTCCTGATTGGTCAAGCGGCCGTTCGTCTGTAGCAGCGTCAGGATTTTCAGATCGAAGTCATCAATGTGGTACATCGCGTTTCCTAAACAGTATCAGGCAGTCGGCCAAACAGACTACCAGCTTTTTAAGCCACGTTGCCTATGAGTTTTTTATTGCTGATTTTCAGCACGTTTTAT # Right flank : ACTTATCAGAATGCGTCGCTAGCGCGACGCATTTCGGGAGCTATTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTACGATGTTCACACAGGTAAATGCCCTGCCAGGTGCCGATATTCAGGCGTCCGTTGGTGATGGGAATCATCAGGCTGTTGCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCAGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTCAGCGCTGCCGAGGTGTGCTTGATGAATACCTGCATCAACCCGACTTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCTCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //