Array 1 58692-57991 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTC01000016.1 Escherichia coli strain MOD1-EC5085 MOD1-EC5085_16_length_118519_cov_54.7879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58691 29 100.0 32 ............................. GCACAAGTGACTACATCAAGGATGGGGAATGG 58630 29 100.0 32 ............................. ATTAAGCGATTTTTCCAGAAAGTGCAATAGCG 58569 29 100.0 33 ............................. TCGACGCGGAGCCGGGCGAGTTCCAGATATTGC 58507 29 100.0 32 ............................. GCTGTCCAGCCTGCGCGCTGGCAAAGGCGCGC 58446 29 100.0 32 ............................. AGGTAATCCTCCGCAATGCGCGTCGCATGTGG 58385 29 100.0 32 ............................. AAAACGCAATGAATGGTGACTATGGGGAAATA 58324 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 58263 29 100.0 32 ............................. GCTGAGGAAATCGCAAAACCCTCGCAAGATCC 58202 29 100.0 32 ............................. ATGTTGACGCTCGAGCGCGACGGTAAAACAAT 58141 29 100.0 32 ............................. CGTATTGCAGTGACTATCCCTAAAAACCTGCA 58080 29 100.0 32 ............................. TCAGCAACAATTATTTTCGTCGCATCGTCATA 58019 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74048-73651 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTC01000016.1 Escherichia coli strain MOD1-EC5085 MOD1-EC5085_16_length_118519_cov_54.7879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74047 29 100.0 32 ............................. CAGTGTTTCCCGATGCCGGAGACATTTCACGA 73986 29 100.0 32 ............................. CAGTGTGTACAGCGGCTGGCAACGGCTGACGC 73925 29 100.0 32 ............................. GCAGGTTACGCGCCAGTTTGCTACCGGATTTT 73864 29 100.0 33 ............................. TCAATCTATAGCGTCAGTAAATGGAATTAAGGC 73802 29 100.0 32 ............................. GCCCTTTTGCGTGGCACGCCCCAGGAACGCGC 73741 29 96.6 32 ..................A.......... TTATCGGTCATCAACTATAGCGCGTATTTACT 73680 29 75.9 0 ...........T...A.ACAA....G... | C [73671] ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTTAATATTTATAAGCGTTATAAATGGGTGGAACCTATAAAGAATTCCACTCATTTGTATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCCGGACTAATCATTGTCATACTCTACAAATTCCGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGT # Right flank : ATAATATCGGCTATACCAACCTAATATTATCAAATGTTAAAGGTTCTAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATCTCTCCTGAATGGCGTGAGTCAAAATATTGCATTTTTATCAAATGTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAGCATGAAATATATGAGTTGGTGAGTTATAAAGATTATCTATACTCAACAGCCCATGAACTTGTTGATTTTCAAGATGGTGTATTACGATTTCAACAAATTAGAACAAAATACAGGCAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAAGAAATATTGTCTTTATGGTAGGAAAACGCAATTTTTCATATTATAAATATGAGATTAAAACAATAATTTAATATCATGCTTTTATTTTAATCTCGAAAATGCCTAATTTCATTAAATACGCTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //