Array 1 40602-40840 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMV02000010.1 Leptospira kirschneri serovar Grippotyphosa str. Moskva ctg7180000003943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 40602 26 100.0 46 .......................... TCGGGTTGGGACTGAGGAGCAGAGTTATGGTTACAGTTTCAATCCA 40674 26 100.0 45 .......................... TATGGCGTTGGACGAATCTGCAATGTATCCAGAGGTTTCAATCCA 40745 26 96.2 44 .........C................ GTTGAGTCGCCATTTTCTGATTTTGTGAATACTGTTTCAATCCA 40815 26 96.2 0 .....................A.... | ========== ====== ====== ====== ========================== ============================================== ================== 4 26 98.1 45 CTTCCTCTTTAATAAGAGAAAGAAAT # Left flank : AATAGAAAACAGATGGAGAATTAATTTTTCAACAACTCTATTATATAATTATCACTCATAACTATCAATAAAGTACCTAATATTTTGCATGGAATCAGTGTTTTGCGATAAAATTAACGGTACTTAATTTTATAGAGATCAGTAGTAGAACCAAATTCCTTGCTTGGAATAAACCTACATCACAGTAATCAGATTGTATGAGTTCCCACAAACTACCTCTCATAGTCGTACTTTGTTGTAAAGTTTAACAATGGTTTATTAAATCTATAAAATGTAGTAGTTCCTACATTTTTTCAGTAGAGCTTAAATCGTTCTCTCGCAATTTTTTACGAAGAAATTCAGTTTTATAAAATAAATATCTAGAATTTAAATCACGTTATATGAATTAGAATTTTATAATTGAATATCTAGGATTTCTCTTTAAGAGAAAACTTTTATAAAGAGGTCGCCTTAAAACCTAAAATAAAATTTTTTTTTAAATAAATCGTTTTTTTGACAAC # Right flank : TAGCGGCCGAAAAGGTGCAAATTTATGGATTAGAAAAAGCTTTATTGAGCTTTCTAGACATAATAATTGCGAACCGAATCGGAGCATACCATACAAATACTAAGTAAAACCGTCAAATCGACTAACGTAGACCAAAGGTTTAAACGCGAACCGGCCGCAAAGGATCGGGAAAAACAGGTTCGCAAAAAGTGTTATATCATAAAAGGATCGGCCCTTAAAAGTCAAGAATATCCTGAAACTAAAAACCGCTTAATTTATGCAAAGATAGGGTTTTCTATAAAAACAAATAAAAAATGTTGTTCAACTAAATATGTTCTTTACTGATTGTTGTATTTTAAAAATATATTAATCACAAATATGGCATTTTTATAAAATTCTTATTATACGTTTAGGTATTTTGAATGGCGACTAACTATATACGATTCAAAAAAAAGAATTCGATTCAATGGGGAAAAATCGAAGAAGATAAAATTCTAACTTTGGACTGTGATAATCTTTCT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTCTTTAATAAGAGAAAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 12887-12716 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMV02000009.1 Leptospira kirschneri serovar Grippotyphosa str. Moskva ctg7180000003931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 12886 28 100.0 43 ............................ TTGAGCACACAACAATTTTGCTAACGAAAACTGTTAATAATAA 12815 28 100.0 44 ............................ TTGAGCACAGGCCGCCCTTGATAAACTCAGAATCGCACGGTTAG 12743 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================ ================== 3 28 100.0 44 CTGAACTTAACTTTGATGCCGTAAGGCG # Left flank : AATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGTGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGAGGCTCCCAAAACACTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGCAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCTAATCGTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAATTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATAATTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : CTAAGCACAAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCGAAGTGAAAATCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAACATGTTGCGTTGCAGATTGAAACGGAGAGCGCGGTTTTTCTTCGCGGAGGCGAAGAAAAATTCGCCCCGCCTTTTATTTTCCGAATGACCGAAAGCTGAATAGAATTATACCGCAATTCGAATATTATAAAAATAGGAACTTCTTCTTGGAAAATCCTTCGTTTTATTTTTTGATCGAGAATGTTTTTCGACCTTGAATCAAATCGTATTTTTTAACGTTTCATGGTCGCAACCCAATGTGCAATGTTTTTGAATTCAGGATTTTCCTCGAGGGAGGAAAAATATTCTCTCGCCCATAAGAAATGAGCGCTTAAATACTCTTCCTCCTGGAGTTCCCGCAAATGTTGTAGTGCCAGTTCCGGTTGTTTGTTAATCGCAAAATATCCGGCAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //