Array 1 181977-180059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJSW010000011.1 Klebsiella pneumoniae strain KPM_27 NODE_11_length_183067_cov_21.0267, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181976 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 181915 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 181854 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 181793 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 181731 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 181670 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181609 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181548 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181487 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181426 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181365 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181304 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181243 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181182 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181121 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 181060 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180999 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180938 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180877 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180816 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180755 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180694 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180633 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180572 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180511 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180450 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180389 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180328 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180267 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180206 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180145 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180087 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2515-3517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJSW010000063.1 Klebsiella pneumoniae strain KPM_27 NODE_63_length_3995_cov_30.4935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2515 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 2576 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 2637 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 2698 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 2759 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 2820 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2881 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 2942 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 3003 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 3064 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 3125 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 3186 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 3247 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 3307 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 3368 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 3429 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 3490 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATT # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //