Array 1 111177-109557 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMXY01000003.1 Streptococcus salivarius strain BIOML-A21 scaffold3_size431601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 111176 36 100.0 30 .................................... ACTAGGCAAGTATATCAAGCCTAAGTGTTA 111110 36 100.0 30 .................................... ATGCTAAAGTATACACTATGGAAGACTATG 111044 36 100.0 30 .................................... CATTCTACTTTGTTAGCATTATAGCGTTGT 110978 36 100.0 30 .................................... AGAAATTCAGCATAATTCTGATGATAATTA 110912 36 100.0 30 .................................... GCTTTAGCAATAGCATATACATAAGCACTA 110846 36 100.0 30 .................................... TAAAATGGTCTACAATCAATTCTAGACCCT 110780 36 100.0 30 .................................... CGAAACTCACCACGGTATCGGTAAGGCTCG 110714 36 100.0 30 .................................... GTTAGGGAAATTAGCTACCACAACCCCAGA 110648 36 100.0 30 .................................... CGTGGTGTTATCTGTCACGCTATCAGCTTT 110582 36 100.0 30 .................................... TTATGATTTAGCAGATTTTGAAAGCATTCC 110516 36 100.0 30 .................................... CACGCGCAACTTTAAGGATAGCCATGAGCG 110450 36 100.0 30 .................................... TATCATCAAACACTAACGACTGTATCTGGT 110384 36 100.0 30 .................................... TCATTACCTAACGTTTTCAAGTTACCAATG 110318 36 100.0 30 .................................... ATTGACTTATTCAATGCTCGGAAGCCGTAA 110252 36 100.0 30 .................................... CCTTGCTGGAGAAATTAGGCTACTCCCTTC 110186 36 100.0 30 .................................... CTCCTGTGACTTTTGTAAACACATCTTCTA 110120 36 100.0 30 .................................... ATAATTAATTAAATAATTGAAGCGGTGGGA 110054 36 100.0 30 .................................... AGTTTCCTCACTAGCTCACTGCTACGGCTA 109988 36 100.0 29 .................................... TTCAAGCTCGAAATTTAGAAAAGGGCTAG 109923 36 100.0 31 .................................... AGATAAAATGCGTTGTCCATTAAGGATAAGA 109856 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 109790 36 100.0 30 .................................... ACGTCTCTAATGTAGTTATTTAGATTGTTA 109724 36 100.0 30 .................................... TTCCAAAATGTTACCCCCCTATTAGAAAAC 109658 36 97.2 30 .........................A.......... ATAGGTATTATATGTCCACTTCTCGTTTTA 109592 36 83.3 0 ............AC...............T..CTC. | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTAGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCGGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAACGGGATCATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAAGACAGTCTACGAG # Right flank : CTCTTTATAACGATTTTCGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTGGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 222393-221500 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMXY01000001.1 Streptococcus salivarius strain BIOML-A21 scaffold1_size477207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 222392 36 100.0 30 .................................... TGTTGAATACGGAACTGAGCAATGCGTTGG 222326 36 100.0 30 .................................... AATACCAAATGCTTCAAATACTTCAGAAAG 222260 36 100.0 30 .................................... TTTCGCTCGTATGCTTAACCGCTTCGCTCT 222194 36 100.0 30 .................................... TAGCTTGTGGTGCTGTATCTGTTTTCGGTC 222128 36 100.0 30 .................................... TTCTACTAAATTCTGCATTTTAATCCTTTC 222062 36 100.0 30 .................................... TAATCTCTTTGATGTCAGTCCCAACCGCTG 221996 36 100.0 30 .................................... TGTTATTCAGAACTTTGTAAGTAAAGGTGT 221930 36 100.0 30 .................................... GATTGGTCTTTTTCTTGCCGAACAATGACA 221864 36 100.0 30 .................................... CAAATGCTGAAACAGCAACGTCGTTGGTAG 221798 36 100.0 30 .................................... TACTGGTATGACTAACCTTGGTAATGGTAT 221732 36 100.0 29 .................................... AAAACCACCAACCCAACATAAAGGAGCTA 221667 36 100.0 30 .................................... CTCCGGGCTTGCCGTAACTATAATCGTCAA 221601 36 100.0 30 .................................... TATCGCGAATGGTAATAGCATCTTCATCTA 221535 36 88.9 0 .............T...............A....GG | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATCAGTCAGATGGTCAAAAAGTATCCAAACTTAACCTTTATCTTATTTCCTAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTGAATATTTTATCTGACCAGGTAGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCCTTAGAGACCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGCCTCACACTTGTTGATTCTGTAATTTTGAATATTCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATGAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTCACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAATCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCTGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //