Array 1 875852-877466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059953.1 Escherichia coli strain 98.1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 875852 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 875913 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 875974 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 876035 29 96.6 32 ........T.................... ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 876096 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 876157 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 876218 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 876279 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 876340 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 876401 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 876462 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 876523 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 876584 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 876645 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 876706 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 876767 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 876828 29 96.6 32 ...........A................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 876889 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 876950 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 877011 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 877072 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 877133 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 877194 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 877255 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 877316 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 877377 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 877438 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 892983-893683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059953.1 Escherichia coli strain 98.1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 892983 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 893044 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 893105 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 893166 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 893227 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 893288 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 893349 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 893410 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 893471 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 893533 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 893594 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 893655 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //