Array 1 51675-52840 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQNP01000024.1 Ruminococcus sp. MCC718 NODE_31_length_56592_cov_58.490475, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 51675 33 100.0 33 ................................. TTCTGCATATTTTTCAGATTGATTGCCTTATCA 51741 33 100.0 33 ................................. CATAATTTCTTTGAAAATATCTAAAGCAACATT 51807 33 100.0 32 ................................. CTGAGCGGTAAAGGAACATGGGAAGCCATGAC 51872 33 100.0 34 ................................. TTTTATATTTTTCGATGATGACACCGCAGTTCTC 51939 33 100.0 33 ................................. TTTTATATACCGCCTGTATATATGAACTACAAT 52005 33 100.0 34 ................................. AAATAGTGATTTGGACGGCGGGAATGGAATTATA 52072 33 100.0 35 ................................. TCATCCATCGCCGCCACGTCATCAGCGTCCGGGAT 52140 33 100.0 33 ................................. GAATAATCTGAACATTACGGCCGTGGCAAAGCT 52206 33 100.0 33 ................................. CATACAATGCCGGATAATGAAACCATATATAGC 52272 33 100.0 34 ................................. TGGCTTCCTGCTTCATGGAATAGTACTGTTCCAG 52339 33 100.0 35 ................................. ATGTCAGCATTCCGTAAAGGCAAAATGAAAGTTTG 52407 33 100.0 33 ................................. CCTGGTGTGTATCTGTTCATACGTTTCCTGAGC 52473 33 100.0 33 ................................. GTCTCATCAGCTTAATGCCCGCTGGGTCGCGTT 52539 33 100.0 35 ................................. GTCGTACTCGGATAAGACACCAGCAGCATCAACCG 52607 33 100.0 35 ................................. GATAAATCAAAAGATTTTGAGGACTTCAAACAGAA 52675 33 100.0 34 ................................. ATACCGGGACATTGACGGACACGCAGAGTTGAAG 52742 33 100.0 33 ................................. TTAATGAATATTCAAGATAATCGCCATCATATT 52808 33 93.9 0 .........................A.T..... | ========== ====== ====== ====== ================================= =================================== ================== 18 33 99.7 34 GTCACGTCCCGTAAGGGGCGTGTGAGTAGAAAT # Left flank : GACATTGAGAGCTATCCACCATATCTGCAAAAATAGGTGGTGAGATAAAATGATGGTTTTAATAAGTTATGATGTTAGTACTGTCAGTGCAGCAGGAAAAACCAGGTTAAGAAAAGTGGCGAAAGAATGTCAAAATCATGCACAACGAGTACAGAATTCTGTTTTTGAAGCTGATTTAGATTATTCCTCTTTTTTGAAATTAAAAGATAGTTTATTAAAATTAATTAATCCAGAAGAGGATAGTTTGCGATTTTATTATCTTGGGAACAACTGGAATAAGAAAATTGAACATATAGGTGCTGAGAAAACATATGATCCAGAAGGCGTAATTATTATTTGAAGGTAGCGAAGGTGTGATGATTCAAAAACCACTTGAGGTTCGCCTGAAAAAACATTATAATAAATAAGTTATATATGCGATATCATATAAATGATATCAGCAGAAATAAGTCCGTCCCAATATGTGGAAATGTTCCGTTACATAAATACAAAATGTAGCG # Right flank : TATCTGCTGGAGTAGTGTTTTAGAGACTATAAAGAAAAGTCTGTAAGTAAGATTCTTCTATGATAATGCAAGGCGAAAAGTTTATTTATTGAGCTTTTCGCTCTTGTTTTATATATAACAGCTATAAATTTGTATGTCAAGAGCAGGCGAAAAATCCGCCGGTCTTGCTATATTCTGAGTCGCCTATTCGGGCAGGCGTCCTTCATACATAATACTCAGTTCCCCATATACCTGTGCCCGGTTGCGAACCGTTGTTGTCCATTTTTTCGTTGCTTTAAAAGTAGCAAGGTATAATGCTTTTAGGAGTGCTGTATCACTCGAAAAAACGCTTCTCTGACGGTTCAGCTTACGATATGTGGAATTCAGGGATTCAATGGCATTTGTCGTATAGATCACCTTTCTGACCGTTGCTGAAAACTTGAAAATAGGTGAAATTGCATCCCGGTTATCCTTCCAGCGTTTCATGGAATTCGGATATTTTGGTGCCCATTTTTCTGTTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGTCCCGTAAGGGGCGTGTGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 15852-15023 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQNP01000164.1 Ruminococcus sp. MCC718 NODE_338_length_130853_cov_61.501663, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 15851 36 100.0 35 .................................... CCAGCATTTAATCTCTTGAAAAGCTCTTTTGACTC 15780 36 100.0 37 .................................... GAGAACAACCTTGTTTTCTTTATTATAGGGTTGTTCT 15707 36 100.0 38 .................................... AAGCTGCCAGAACCTCTTCATTGATGGTAGTATTTAAC 15633 36 100.0 36 .................................... ATAATGCGTAACTATCTCCGGCTGTCTCAAGTACTT 15561 36 100.0 38 .................................... CTATTTTTCCATTTTTTCATTAGCTTTTTCGCTCTATC 15487 36 100.0 33 .................................... ACATTGACAAGTGAATAATGAAATGTTAGACAG 15418 36 100.0 38 .................................... ACCATATCAGATAAATCTTGGTTTGTCATCGCATCACC 15344 36 100.0 38 .................................... ACTTTTCAACCGCTCTTGCAACGTCTCGGATGATTCCT 15270 36 100.0 35 .................................... ATGATCGATGGAAAAAGATCACAAACCTTTTCGCT 15199 36 100.0 33 .................................... ACTGTATTTTCCCAGCCACCAGAATGTGAATGC 15130 36 97.2 35 ...................................T ACTTTTACATCTCTATACTGATAATATGTATCCAT T [15129] 15058 36 86.1 0 ...............A.....TC..........T.G | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 98.6 36 ATTAAGAAATATAGCTCCCCGAGAGGGGACGGAAAC # Left flank : TACAGCGTTTTTCAGAACGGTATCAGGAAGCATTTTTGAGCAAATTTGCAGGTAATCATACAATTTCAGATCGTAGCGTTTTTTTAGGCGGCGGCAGTGGATTTGTATCAAAAACTATGATATACTCATTATTTGAAGGCAGAGAAGCAGTTGCGGTTACAAAAGATATTTTTGAGAAAACAAAGGTTCCAAGAGAACACAAGCATGAAAAAGATTTGCTATACGGTGTCTCACCGCATATTCTCAAATGTACTCGTTATCAGGGAAAAGAATACATGATGGGACAGTGTGAGATGACGTTGCATCCAAAAGAATCATAGAATCCAAAAGAATCAAAGAAGCAGAAATCCGGGAGTTTTGCAGGCGTTTCCCACGCACCGCATAAACACTGGGAAAATCTGCAGAAATTCATTCCAAAGAAAGCTATATTTCCAGAAAAAACAATTTGCCACGCAAAACGGCAAATACCCCCAGAAAACAAGCGGGGTCCAAGAGATGGT # Right flank : GGATTTCTTCTATCTCCAACTATTGGCATTGTTTAATTAAATTCTCCGTCAGGGGGCAATTTGCAAAGGGGGATTTTTATGAGTTTGTTGTATGTAAATGAAAATGGTGCAACGATTGGTGTGGAAGCAAATAAGTGCGTGGTTCAATATCGAGATGGCATGAAAAAAATGATTCCGATTGAATCACTGGAAGGTATCACGATCATGGGACAGTCGCATCTGACAACAAAGTGTGCGGAGGAATGTATGTGCAGAGGAATCTCTGTCGCATATTTTTCAAAGGGCGGTAAGTATTTTGGACGACTGATGTCCACGGATCATATCAATGTTCAAAGGCAGAGAAAACAAAGTGCTTTGTATGATACAGATTTTGCGATGAAACTGGGACAGAAGATTTTGAGTGCAAAGGTGAAAAATCAAAGCGTTGTTTTGCATCGCTATGAAAAAAGCCGTGAGCTTTTGCTGGATGAAGAACAGAAAATGATGCGGATATGCAAAGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAGAAATATAGCTCCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //