Array 1 18229-17181 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRBX01000003.1 Pseudomonas aeruginosa strain 1689 1689_NODE_3_length_385426_cov_90.2016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18228 28 100.0 32 ............................ ATCGAACCGCGGCGACCGTAGGCCATCGATCG 18168 28 100.0 32 ............................ CTCGCCGGGGGGCAGGGATGCAGGGGGTAAAT 18108 28 100.0 32 ............................ GTCTGTTCGTCTCCGAGCAAAGCGCAAACGTG 18048 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 17988 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 17928 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 17868 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 17808 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 17748 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 17688 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 17628 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 17568 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 17508 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 17448 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 17388 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 17328 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 17268 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 17208 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38044-39388 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRBX01000009.1 Pseudomonas aeruginosa strain 1689 1689_NODE_9_length_186669_cov_89.9319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38044 28 100.0 32 ............................ ACCAAGCGGAAGCTGCCACCCACTTCATCGAT 38104 28 100.0 32 ............................ TCATCCTCGCTGTGATCGCACGGAACGCCTAC 38164 28 100.0 32 ............................ TCGATCAGGGCTGGCAGCTATGCGACACACCA 38224 28 100.0 32 ............................ TGACGCCCCAGGAAGTCAGCGCGATGGACCCG 38284 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38345 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38405 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 38465 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 38525 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 38585 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 38645 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 38705 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 38765 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 38825 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 38881 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 38941 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 39001 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39061 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39121 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39181 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39241 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39301 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39361 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48663-47914 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRBX01000009.1 Pseudomonas aeruginosa strain 1689 1689_NODE_9_length_186669_cov_89.9319, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48662 28 100.0 32 ............................ GCCCCAGATCAGCGTTGCGCCGCACGCGATGA 48602 28 100.0 33 ............................ TTCGACACTGCTAGAGCAATGTCCGGGCATCCC 48541 28 100.0 32 ............................ AATGGCGTGGTCCTGACCGGCTTGTTCAGTGA 48481 28 100.0 32 ............................ ACTCAGAAACCGGAGCGAAACCCATTGGACTC 48421 28 100.0 32 ............................ TGTATATGCCCGTGATAGTAGCGGGTCCAAAG 48361 28 100.0 32 ............................ CTGATCCGGGCGACGGTGGAGACGGTGGGGAT 48301 28 100.0 32 ............................ TGGCACTCTGATCAGCGCGCAGCTCGAACTGG 48241 28 100.0 32 ............................ GTATCCGCCCGGCCAATTCCGCATCAACGGTA 48181 28 100.0 32 ............................ AAGCATCGTAGTTCGCCATTAGAAGGCCCCCA 48121 28 100.0 32 ............................ GCGACTGGGACGTTGTGCTGCTGCAACTGACC 48061 28 96.4 32 ..................C......... AGAAAAAGCCCAGCCTTCGAGCTGGGCTTTTT 48001 28 100.0 32 ............................ TCGAAGGGGGGAAAAATCCGCGAATGAGAGGG 47941 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //