Array 1 2039693-2038201 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051452.1 Salmonella enterica subsp. enterica serovar Anatum strain CVM 20746 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2039692 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 2039631 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 2039570 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 2039509 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 2039448 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 2039387 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 2039326 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 2039265 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 2039204 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 2039143 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 2039082 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 2039021 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 2038960 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 2038899 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 2038838 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 2038777 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 2038716 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 2038655 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 2038594 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 2038533 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 2038472 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 2038411 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 2038350 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 2038289 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 2038228 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //