Array 1 225106-226230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDC01000013.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000223 CFSAN000223_contig0012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 225106 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 225167 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 225228 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 225289 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 225350 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 225411 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 225472 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 225533 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 225594 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 225655 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 225716 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 225777 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 225838 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 225899 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 225960 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 226021 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 226082 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 226143 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226203 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 242353-243725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDC01000013.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000223 CFSAN000223_contig0012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 242353 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 242414 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 242475 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 242536 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 242597 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 242658 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 242719 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 242780 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 242841 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 242902 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 242963 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 243024 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 243085 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 243146 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 243207 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 243268 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 243329 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 243390 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 243452 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 243513 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 243574 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 243635 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 243696 29 96.6 0 ...............A............. | A [243723] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //