Array 1 1097-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYU01000037.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain CVM N40939 N40939_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1096 28 96.6 32 -............................ CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1036 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 975 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 914 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 853 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 792 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 731 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 670 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 609 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 548 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 486 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 383 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 322 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 261 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 200 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 139 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 17 29 99.8 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16969-16147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYU01000042.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain CVM N40939 N40939_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16968 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 16907 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16846 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 16785 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 16724 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 16662 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16601 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16540 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16479 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16418 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16357 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16296 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16235 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16174 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGTGACGCTGGTCTATACCGGCAACGAACGCGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 385-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYU01000080.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain CVM N40939 N40939_contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 384 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 323 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 262 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 201 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 140 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 79 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTA # Right flank : GATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //