Array 1 4345-116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXHD01000280.1 Xanthomonas oryzae pv. oryzae strain IXO842 contig_280, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4344 31 100.0 34 ............................... AATCGCCTCGTGCGCGAGCGCTACATCACGCCTA 4279 31 100.0 34 ............................... CTGAAGCGTCTATCCCGGCACGTCAGCCCGTCAA 4214 31 100.0 35 ............................... AGAGCTGTAGCACATATGGCCGATCTGCCCGAACA 4148 31 100.0 34 ............................... TGGAAGCCCTTGATGATCGCCTGCGTGTCGTCCG 4083 31 100.0 35 ............................... TTGTTGCGTATCAATGCCCCTGTTCCGTCAGCATC 4017 31 100.0 35 ............................... GAAAAGAGGGCAGCACCCATGAAGCGATGGATAAA 3951 31 100.0 35 ............................... CTCAATGACGTTATTACTCTCATCGATCCATTGCA 3885 31 100.0 33 ............................... AGGCATTGGTATCTTCCGAAATCAGCCTAGGCA 3821 31 100.0 35 ............................... GCACGTCAAAGCACGCCCGCGCAGATACAAGATTT 3755 31 100.0 36 ............................... ACTGAGCTGAGTGCAACCTGGGAAGTATCCGGGCCG 3688 31 100.0 33 ............................... TTCACTGGTGACAACATACGCAGTAACACTCCC 3624 31 100.0 35 ............................... ACTAAAGTAAACGCGAACTTTGCGGATGTGCAGGC 3558 31 100.0 34 ............................... GTGCTGGGCATGGAATGAGCAACCGTACCCGTAG 3493 31 100.0 35 ............................... GCCTTCGTTCGATGCAAATGGAATTGCAACAGTAG 3427 31 100.0 36 ............................... AGATGTTGTCAGGACTATGACATACGAGTCAGCAGT 3360 31 100.0 36 ............................... TTGAATCCTGGGGATGTGTATGCAACCTCGCCGGCA 3293 31 100.0 34 ............................... TGTACTCTTCCTTGACCCACCGGGGCGCATCCGC 3228 31 100.0 34 ............................... TGGCACTATTGCTGATGTGGTTGGGTTTTTAACT 3163 31 96.8 36 ..............................A AGGTCTGCCGTGACTGTGTAGACCTGCTCCTGCACC 3096 31 100.0 35 ............................... ACTTTTGGCTAGATTATGAGGCATGGGTATTGCAC 3030 31 100.0 35 ............................... ATCGTATGACTCTTAAAAAGGATGTGCCACCCGGC 2964 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 2897 31 100.0 34 ............................... AATATTGCACAAAGGACAACAGGTGAGACGGCAC 2832 31 100.0 35 ............................... GTGCCTAGGGTCTTCCCAGCGACGCTCGGCACATC 2766 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 2700 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 2633 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 2568 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 2503 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 2437 31 100.0 34 ............................... AATGCCCTTGCTTCAGATAGACAAAGCGATGCCG 2372 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 2307 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 2241 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 2176 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 2113 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 2049 31 100.0 33 ............................... ACTGAGCGCCGGCAGCGCGTTGCCGACGCCCAC 1985 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 1921 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 1855 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 1790 31 100.0 34 ............................... GAGTTGTTACGCGCCTGGCGCCCCTTGGACAGGC 1725 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 1659 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 1594 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 1529 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 1463 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1396 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1330 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1261 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 1195 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 1131 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1065 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 1001 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 936 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 871 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 805 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 737 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 671 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 605 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 539 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 474 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 408 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 342 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 277 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 212 31 100.0 35 ............................... TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 146 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 65 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //