Array 1 242532-243413 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYR01000001.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2815 NODE_1_length_369053_cov_1.85889, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242532 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 242593 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 242654 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 242715 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 242776 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 242837 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 242898 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 242959 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 243020 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 243081 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 243142 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 243203 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 243264 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 243325 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 243386 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 259683-262946 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYR01000001.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2815 NODE_1_length_369053_cov_1.85889, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 259683 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 259744 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 259805 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 259866 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 259927 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 259988 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 260049 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 260110 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 260171 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 260232 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 260293 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 260354 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 260415 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 260476 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 260537 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 260598 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 260659 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 260720 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 260781 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 260842 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 260903 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 260964 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 261025 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 261086 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 261147 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 261208 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 261269 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 261330 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 261391 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 261452 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 261513 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 261574 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 261635 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 261696 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 261757 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 261818 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 261879 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 261940 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 262001 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 262062 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 262123 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 262185 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 262246 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 262307 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 262368 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 262429 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 262490 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 262551 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 262612 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 262673 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 262734 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 262795 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 262856 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 262917 29 93.1 0 A...........T................ | A [262943] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //