Array 1 344620-345807 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAC010000003.1 Salmonella enterica isolate 1521_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 344620 29 100.0 32 ............................. TGGCTGAATGCCAAAGAAGAGGATATCTCAAA 344681 29 100.0 32 ............................. CGATTTCCGTTTCCATCTGCACGATTTCAGCA 344742 29 100.0 32 ............................. CCGGTATCGTTTCAGGATAGCCCACAAATACA 344803 29 100.0 32 ............................. TGCGCTAACCCGGCCTACCGCGCCGACTACGA 344864 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 344925 29 100.0 32 ............................. CACAAAACGGGCATCCGCCGGGAAGGTTCGGA 344986 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 345047 29 100.0 32 ............................. GGCGGTGAGGCTAACAAAATTATGACCTATAT 345108 29 100.0 32 ............................. TGGTGCATGAATATCCGGTGACTCGTCGTCCG 345169 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 345230 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 345291 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 345352 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 345413 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 345474 29 100.0 32 ............................. GCCCGCCTGTCGCTGTACGCCGGGGGCGCATA 345535 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 345596 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 345657 29 100.0 33 ............................. CCTCGCTGACGGCCAGCAAGCTCACGCATTTGC 345719 29 96.6 32 ...........A................. GACGGCGCTAGTTCGTCATATCAATGTGAATT 345780 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATTGGACTATTCACGCTACCGAATGATGTACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 362442-364423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAC010000003.1 Salmonella enterica isolate 1521_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 362442 29 100.0 32 ............................. AGTTCCGGCGCCACGCATAACCCTGCAATCCT 362503 29 100.0 32 ............................. GCAAATATTAACCCGGCTCGATTTAGAACCTG 362564 29 100.0 32 ............................. ATTTTCATCGCCAGTGCGGGGTCCTGTGGGTT 362625 29 100.0 32 ............................. GGCTGAGTCGGCCAGGCCGTGGTAAAACGATC 362686 29 100.0 32 ............................. GCGGAAAACGCTACGCTGAAACAGCAAAACGA 362747 29 100.0 32 ............................. CCCGAGGGGATATTTATTCGGCAGGGGAAGAC 362808 29 100.0 32 ............................. AGATTTTAACTCAGGTTCTTATTAGTAGTTTT 362869 29 100.0 32 ............................. GCGGCTTGTCGGGTGCCCGCCCTGCCGCCCTG 362930 29 100.0 32 ............................. GGCATCGTTATACGCGTGACGGTTTTAATAGT 362991 29 100.0 32 ............................. CGTTTGAGCTGCTTCCACGCCTTGCCATCCAT 363052 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 363113 29 100.0 32 ............................. AGGGGGCGCAGGTTCGCCAGATTTATAAAAAA 363174 29 100.0 32 ............................. CATGGGTTGTCCTGTTTCATGCTGTTGCATTC 363235 29 100.0 32 ............................. TTGCACTCACCTCTCTCGCCACAAAACCACCT 363296 29 100.0 32 ............................. CCCTGGCGGGCAATCCCTGCCTGGTCATGGCC 363357 29 100.0 32 ............................. CTGATGGAACGTTACGGGCTGACTTGGTGCGA 363418 29 100.0 32 ............................. GCGAGCGCCACCGACGTTGCCGCCGCCCGTAT 363479 29 100.0 32 ............................. ACGCCCATAACGGCGAACTCATCCATCAGCAT 363540 29 100.0 32 ............................. CCGGGGAGTGATGCCCGTCAGTTCGGCACTGT 363601 29 100.0 32 ............................. GGACTGTAGATCTTGGGGGGAAATCAACTTAC 363662 29 100.0 32 ............................. AGTTACGGCCCATTAAACGGGGGGCAATTTAA 363723 29 100.0 32 ............................. TCCAGCCCGTTTTTTTAACCTGTTCTTTAACG 363784 29 100.0 32 ............................. CCAGTGAGCAGGTCGCGCTCAACCGCGCTGCC 363845 29 100.0 32 ............................. CGCATATAAAACATTTGAATCAATAGTGACTG 363906 29 100.0 32 ............................. GGGGAGCGGATCGTTGGTGATTTTCTCGGTAT 363967 29 96.6 32 ............................C CTTGGCAAAATAAATATAATGTAAATCCATGC 364028 29 100.0 32 ............................. GGTCTCAAATGAGAGAACGCGAAAATGACCAA 364089 29 100.0 32 ............................. CATATGCACGGCCATTTTGCGTATGGCTTCGC 364150 29 100.0 32 ............................. GCTAAATTAATGAAGGCAAGCCTGTGGGGCCG 364211 29 100.0 32 ............................. GCGAGCCTCAGAGAATACACTGGGAACAAAAC 364272 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 364333 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 364394 29 96.6 0 ............T................ | A [364421] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGATCCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGTCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACTAACACGGAATCGGGATTTGAGTTTCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATACTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //