Array 1 114703-116195 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAL01000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3276_R1 NODE_2_length_299161_cov_0.442343_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114703 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 114764 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 114825 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 114886 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 114947 29 100.0 32 ............................. CGTCAGCTCGGTATTGAGGCCGGGGACCGCCC 115008 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 115069 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 115130 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 115191 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 115252 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 115313 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 115374 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 115435 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 115496 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 115557 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 115618 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 115680 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 115741 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 115802 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 115863 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 115924 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 115985 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 116046 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 116107 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 116168 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132327-134230 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAL01000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3276_R1 NODE_2_length_299161_cov_0.442343_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 132327 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 132388 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 132449 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 132510 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 132571 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 132632 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 132693 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 132755 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 132816 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 132877 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 132938 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 132999 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 133060 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 133121 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 133182 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 133243 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 133304 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 133365 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 133426 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 133487 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 133549 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 133652 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 133713 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 133774 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 133835 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 133896 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 133957 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 134018 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 134079 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 134140 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 134201 29 96.6 0 A............................ | A [134227] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //