Array 1 812142-812993 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071446.1 Thermosipho ferrireducens strain JL129W03 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 812142 30 100.0 37 .............................. AAATATGGCGTTTTTGCAGCGATAAACATCATTTTGG 812209 30 100.0 36 .............................. TGTTTTCAAAAGTTCGAATTCCTCATCGGTAAGTCG 812275 30 100.0 40 .............................. ACGCACGTGCTGCCAATACAGACAGCACGTGCTGTTAACT 812345 30 100.0 39 .............................. AGATAATTACTTATTAATTCTTCACTATTTTCTGGATAA 812414 30 100.0 42 .............................. GCTTTTTATATAATCACTATTTAATCTCATACTTAAATCTTC 812486 30 100.0 41 .............................. TAAAATCTTACCTGTTGCGTAATCAACGACCGCTTCATACC 812557 30 100.0 39 .............................. CATATCTATTAACTTTTTTAGCTGGATCATCTCTTAAAG 812626 30 100.0 43 .............................. TTTTTTTCTCCCTTAAAAATTGCCATAAAATCCCCTCCTTTTG 812699 30 100.0 40 .............................. TTTTGATCATACACATTAATCTCATATACATTCCTTTTCC 812769 30 96.7 44 ....................A......... TAAATTTTTTTTTCTAAAACTTTAATGAAAACATAGATGTGCTC 812843 30 100.0 44 .............................. AAAACTACTATCACGTTGCATCCCCTGCCAAGGGAGTTACCTCC 812917 30 100.0 16 .............................. CATACAACTTTTCGAT Deletion [812963] 812963 30 73.3 0 T...TC...A..T.G..G..A......... | T [812978] ========== ====== ====== ====== ============================== ============================================ ================== 13 30 97.7 38 GTTTAGCTTCTACCTATAAGGAATGAAAAC # Left flank : GGGGCCTGTTTTTTTGGTCATATGTAAAAGTTAGCGAGGGTTGCTCTCCGCCCATGTCATTCCGAACCCGAAGGGTGAGGAATCTTAATTGGCGAGATTAGCAAGAGTTAGCAAGGTTGGTAAAATAAGATCCTTCGTCGCTAACGCTCCTCAGGATGACATCCCCCTCGCATATGCTCGGGATGACACTCTTTTTTATGTCATTCCGAGGAGTTCAGCGACGAGGAATCTTAAATAATAAAATTAACAAAATATCTCTATATCACCCTCGTTCACCATCCGTTAACATTTTATATCTAAACCAGCGTGAATAAACAACCACGCTTTCTTAACATTGTAAAGTTTAAGTAAACGAGTGAAAAATGGTGAAAAACAGCCAATTTTATCGGGACAAAAAACGCACGTAAAGGCGCATAAATAAACGACTTTACTTTTAATTAACTTCTTTCTAATCGGAATGTAACTTTTCGCAAAGCCTTATATTATATAATTTCTTACGG # Right flank : CTAAACAAGCGAGCTTTGAAGCTCGCTTTTTTGTTGGACTTGATAATAAATTAGATGGAAATGAAAATGTGGAGATTTGGAATAATAAAGTAACAAAGATAAGAGGCAGATAAAAAGAGTGAAACATATAAAAGAAAGAATATTAAAATAGGTTTGTATAATTTTATTAAAATTTGACAATTTCTTATTAAATGATACAATATATTTTAATTATTATAAAGAAAGGGGATAGGGAAATGGATATTTCTGTTAATATTAGAGTTTATCGACTTTTTAAACTATTTATAAATTTGCTTATTATTGGACCTATTTTAGTTCCTTTTATGTTATACAAAGGATTGTCTTACTTTCAAATTTTATCTCTGCAAACGATTGCAAGAATAGCGGTTATTGTTTTTGAGATTCCCACGGGGACAATTGCAGACAAAATTTCAAGAAAAATTTCTATCTTTTTTTCAGGAATATTTGCGGCTATAAGTATTTTGTTATACATTTTTGGG # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGCTTCTACCTATAAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 926727-925797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071446.1 Thermosipho ferrireducens strain JL129W03 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 926726 30 100.0 40 .............................. CCTGATTTAAATTCCTTAAACAACGCCAATTTATCCATAA 926656 30 100.0 40 .............................. AGTATGAACCTGCCAATGGTATTATGTTCGTACATTGAGG 926586 30 100.0 36 .............................. ATATATCGGCTTTTAGTCAAGCTTATCAGTATGAAC 926520 30 100.0 38 .............................. AAACTTCTTTAAATCATTATATAACCTCTTCATTTGTT 926452 30 100.0 41 .............................. ATTTGGCTTGTGCATTGTCTAAAGCTTCTTTTATAATATCG 926381 30 100.0 40 .............................. AAAACCACCTCCATACTACTCCTCTACTATCAAGGGCCTG 926311 30 100.0 38 .............................. AAGCCATCCCCAGTCCTTCAATTCTTGTATTATTTCAG 926243 30 100.0 38 .............................. CCCTATTCGGGTTTCCTGGCTATTCACTTTTCAAAGAG 926175 30 100.0 38 .............................. ATAGATGGATTAATTACTAAGAATGCAAACTATGTATG 926107 30 100.0 38 .............................. TTTTGCCTGCGGGGGGTAACATTATTCTTCTACTATCG 926039 30 100.0 43 .............................. ATGAAAACAACATCCACAAAATAATAGTGCTTTCGTTCGTACG 925966 30 100.0 38 .............................. ACCAATAATAATCATTATTTTTTTAAACATAAATTTCG 925898 30 100.0 42 .............................. GAGCTTACTTGCTCCACTTTTTTTCTAAATCCTTTATAAAAT 925826 30 90.0 0 ...........................TTT | ========== ====== ====== ====== ============================== =========================================== ================== 14 30 99.3 39 GTTTAGCTTCTACCTATAAGGAATGAAAAC # Left flank : AAGGTTGGTAAAAAAACAAGATCCTTCGCTACGCTCAGGATGACAAAAAAGGTTGACATTCCAAGGAGCGTAAAAGGCAAGGAACCCCCCTCCCCCGTCATTCCGAGGAGCGTATGTGACGAGGAATTTAACCCATCCCTGTCATTCCGAGGAGCTCAGCGACGAGGAATCTTATAACTGGCGAGGCTCCCCCTTCTCCATGTCATTCCGAATCCGAAGGGCGGGGAATCTTAAATAATAAAATTAACAAAATATCTCTATATCACCCTCGTTCACCATCCGTTAACATTTTATATCTAAACCAGCGTGAATAAACAACCACGCTTTCTTAACATTGTAAAGTTTAAGTAAACGAGTGAAAAATGGTGAAAAACAGCCAATTTTATCGGGACAAAAAACGCATGTAAAGGCGCATAAATAAACGACTTTACTTTTAATTAACTTCTTTCTAATCGGAATGTAACTTTTCGCAAAGCCTTATATTATATAATTTCTTACGG # Right flank : TTGAATTACATCTATTCAGATTATCCAGGGATTTTGCAATGATAAAAATACCAACAGGTATTCCTGTTCCAACATCCAGGTAAAATAAATGTAGAGATGTTATTGTTTCCGGGAAGACAGAAGAAGATACGCGAAAAATATCAGAGTTGTTTTTGATAAGAAACCTCAGATGTGGTGGGATTTACCAGTAACGGAATTTGAACCATGTATGATACATGATCCGAGGGCATTGCCCCCTGATAAATCAGCGATAGGACTTGATGCCGTCTTCATGTACAGAGTTCTGAAATTTTTGTGGCTTAACTGATTTTTTCCAGTTCAAGTATAAGTTTCTGTACAATATCCTGCCTTTCATTGAGAATTTTTAGCGCGTATTCAAGCTTTCCTGAATCTTTGAAATATCCTCGTGCATCCTGCTTATTTTTCTTGAAATATTCCGCAAGTCTTTCAAGATAAGGTTTCAACCAGGATACGGTGTTAAGAAATTCATTAACTTTACC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGCTTCTACCTATAAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 942180-943117 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071446.1 Thermosipho ferrireducens strain JL129W03 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 942180 30 100.0 38 .............................. GAATTAATAGCTAATATTGGTCTGGATATTAGACCAAG 942248 30 100.0 37 .............................. TTTTGGAAGAAAACAACATTAAATACGAAAAACTTGA 942315 30 100.0 43 .............................. TGAATTTTATTAAGAGTATTGACAGCATCGAGCAGGATTATGA 942388 30 100.0 40 .............................. GTATGTTGAGAACATTAATTACAGATAACGTCAAATTTGG 942458 30 100.0 44 .............................. CATCAAATATGTTCTTAAAGAATTAGGGGTCACGCACAGAATAG 942532 30 100.0 40 .............................. TTATTGTTGTTTTTAGAACTGGGCATGCAGAAGTAGAATG 942602 30 100.0 41 .............................. TTTATGTTTAGAAAAGTAATAATTGTTGATGACAGAAATTT 942673 30 100.0 41 .............................. ATGTACCCTCTCACCCAATTTAGTTAAATGGGAGGAGGTGA 942744 30 100.0 39 .............................. TATTATTACACCCAGCAATACGCACGTGACGTGATAGAG 942813 30 100.0 40 .............................. AAACATTTGATTACTTCGAAGTAATTTTTCTCCCGTATAG 942883 30 100.0 40 .............................. TTTTCTCTTCGGGGATTGAGATAGAAACAGATAATCATTT 942953 30 100.0 37 .............................. GAAAACTAACAGTTACATTGACACGGGTATCAAATAA 943020 30 100.0 38 .............................. TCAACATATCGCAGCAAAGCTACTCAGATTACAGCGGA 943088 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 14 30 100.0 40 GTTTTCATTCCTTATAGGTAGAAGCTAAAC # Left flank : CAAACACAATTCAGTAATTTCTTAAAAACGAAAAAAGAAAGGAGCGAATTTTATGAAAAAACAAAATTATGAAATTCTCTGGGAAGGTAAAAATTTTATTGATGGTTATAGTGTTTTATTTACAAAAGACTCCGGTTATTACTTTTTAACAAAAAACAAAAAGACAAAACAGAAGACTATTTTGTGGAATGAAGAGCCTGAGGCAAATTTTGAAAACGAATATATAACTTTAGATATAATTAAACACGACGCTGAAGATCATCACAAAAAACTTGCTGTTAAAAATATAGATATTTTATCTGGTTCAAAGGATTAAAACTATAAAAAAGTGTTGTGAAAAAGACAGGTAAGTGTACTAACAGGTATAATAAATAGTTGAGGGAATATGTAGTTTATAAATTGAATATACTATGCAATAACATAAATCTTAGTTTTTACTTTTTGTAAATAATAAACTAAATACAAACAAACCCGCGGTTTAATCCGCGGGTTTTAATTTA # Right flank : CCCGTAAGAAATTATATAATATAAGGCTTTGCGAAAAGTTACATTCCGATTAGAAAGAAGTTAATTAAAAGTAAAGTCGTTTATTTATGCGCCTTTACGTGCGTTTTTTGTCCCGATAAAATTGGCTGTTTTTCACCATTTTTCACTCGTTTACTTAAACTTTACACTGTTAAGAAAGCGTGATTGTTTATTTATGCTGGTTTAGATATAAAATGTTAACGGATGGTGAACGAGGGTGATATGAAGATAACCTGTTAATTTTATTATTTAAGATTCCTCACCCTTCGGATTCGGAATGACATGGAGAAGGGGGAGCCTCGCCAGTTATAAGATTCCTCGTCGCTGAGCTCCTCGGAATGACAGGGATGGGTTAAATTCCTCGTCACATATGCTCCTCGGAATGACGGGGGAGGGGGATCCCTTGCCTTTTACGCTCCTTGGAATGTCAACCTTTTTTGTTATCCTGAGCGTAGCGAAGGATCTTGTTTTTTTACCAACCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCCTTATAGGTAGAAGCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 973893-973126 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071446.1 Thermosipho ferrireducens strain JL129W03 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 973892 30 100.0 35 .............................. AAGTATATGATGATATAGAGATACGGCAAGAATCC 973827 30 100.0 35 .............................. GTTTCTACATTGATTGGTTGCAACGCTGGCGTAAA 973762 30 100.0 36 .............................. AAATTTCTTTCAAATTATCATATGCACCCTGCCATC 973696 30 100.0 38 .............................. TCTTCTGTAGGTGTATATGTGTCAGGCCATCCTGCTAT 973628 30 100.0 40 .............................. ATGATTGCATGGAAAGGTATTGAAACAGCAGTTTTTACAC 973558 30 100.0 39 .............................. GTTGACAAGCAAAGGAATGGTATGTTAGGCGAAAATATT 973489 30 100.0 38 .............................. GATCTATTGTATTTGTAGTCCCATCTCCATGTGTTTAA 973421 30 100.0 36 .............................. GTACATTTCTTTTGCTTTCTTTTTTAGCTGCGATAA 973355 30 100.0 36 .............................. GTACATTTCTTTTGCTTTCTTTTTTAGCTGCGATAA 973289 30 100.0 36 .............................. AAGTCGTATACAATGTTGTAGTTGTAGTATTCTTCG 973223 30 100.0 38 .............................. TCTGTCCCAATTCTAAAAACAACAGAATTACCATGTAT 973155 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 100.0 37 GTTTTTACCGTACCTATGAGGAATTGAAAC # Left flank : TATAAGAAAATCACTTTAAGCGTTAATCCGCTTATTCCAAAAAAATGTACACCATTTTCTGAACGCAAGCTTATAGATCGAAAAAGTTATACCAGAAAAATAAAATGGCTTAAAGAAAATTTAAAAGCAGTTAAAATTATCTCCGAAAGTTATAAATCTGCAGAGTTACAATACACTCTCAATAATTTTAATGAAAAAGAAGCAGAAAATTTTGTTGAGAATTATATAAGAACAAAATAAAATTTCTTGTCGTTTTTTATCAAAAGATTAAATATTTTTCAAAAAGGTAACTAACACAAAATGTGAACCTATTAGAAAAATTCTGTCGATATGAAGTACGAAAAAAATCCCTGGGGATCGACAGAAAAATAGCAAAATATTTTATTTTGAATTAACATTTAATTAACCTTAAAAAAATTATTATATGTTAGAATTAACAACACAGGAAAGTAAAGTAATAAAAATATAAAAAATGTAACTAAGTTTATATGATTTTTAGT # Right flank : AATTGCTTTATTAATCGGAGTCTCCTAAATCTTAAAGTTAACAGTTATAAAGATTCTAAATAGGAAAAATTTTATTAGAAAATTACAGAAATTAATTGTGGGTAATCATATCTATGACTTTCAAATAAGGCCCCCTTAAAACATTGACACAGTCTCAGTTTTGTGATAATATAATTTTCGCGGCGGCGTAGCTCAGAGGCTAGAGCAACTGATTCATAATCAGTGTGTCATGGGTTCGAGTCCCATCGCCGCCACCAAAATAAATGTGGAGCCTCTCTGGCTCCACTATATTTTTGCTACATTGCTTAAATAATCAGAAATACAACAACCCATTTTTTATAAGATTTGTAAAACTTATTCCAAATTTTTGACTTGCATTCCCTTATTAATATACCCTGATTTTATAAACTTTTTATCTTCCATGTTCAGAGTTTTTGAAATAAAGTTTGTAAACCTTATTGGGAGACCCATTGAAAAGAAAAAGTTTGGACGATCCTGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTACCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 1927202-1924395 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071446.1 Thermosipho ferrireducens strain JL129W03 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1927201 30 100.0 37 .............................. GATGAGGCGAACTATGTTTTTAATTCGCGTTTTTGGC 1927134 30 100.0 35 .............................. GAGGCTATAAAAAAAGTGACTTTTGTGACGCTAAA 1927069 30 100.0 36 .............................. TAAAGTCCTCCATAAAAATATTTTGCACTGGAACAA 1927003 30 100.0 35 .............................. AAGTTTGGGAAGGCCTCGAAACAACGTGGGAATGG 1926938 30 100.0 38 .............................. GCTATTTTGGTGGTATAGTACAAACAACATGGGAAATA 1926870 30 100.0 35 .............................. AATGCAATAGCCCAAGCTCTTGCCTGGGCTTATAA 1926805 30 100.0 35 .............................. TAACAAATCTGTCGAAAAAGTGTGTGGGGGATGAT 1926740 30 100.0 37 .............................. TCCTATTACCTCCTTTTTTATCACGGCCGGCGGGCCG 1926673 30 100.0 36 .............................. TTCCATTTTGAACAAACGAATATCGTCTTAAATCCA 1926607 30 100.0 34 .............................. CTGCTTTTTTGCGGGCGAGAATTACTACCTTTTT 1926543 30 100.0 37 .............................. TATATTTTCGCCAGGATATCTGCAATATCCTGTTTGA 1926476 30 100.0 36 .............................. AACAAATGAAAAATGATTTGTTCGGGGAGTGAGAAA 1926410 30 100.0 36 .............................. CGCTAATGTTGATTTTTCTGCGCCAAGTGGAGTAAC 1926344 30 100.0 35 .............................. TAAATAGTATGCTTTTTTCTTATTTGTGGTTCTAC 1926279 30 100.0 35 .............................. TTTTGATATGATAGGGAATTTGGTGGATGGTAGAA 1926214 30 100.0 36 .............................. TAGGAATTCACAACTTGTCCATCGGTGTTCAAAGAA 1926148 30 100.0 38 .............................. TATGATGGTGTGAACTTGACTCTAAAAGGTGGCACATT 1926080 30 100.0 36 .............................. TATTCAAAAAATTCAGGTTGCCCAACAACCATAACA 1926014 30 100.0 35 .............................. ATCTTTCCAGTGCGTTTATCCTTTTCATTCCAGAC 1925949 30 100.0 37 .............................. TATTTTCTCTTATTATTTTTACATCTTCTCGACCTAC 1925882 30 100.0 34 .............................. TTACTAAAGTATGTAAAAAACTAATGAGCTTTTG 1925818 30 100.0 38 .............................. ATAGCAAATAAAATCTTTAATGGCGGAGATGGATATAA 1925750 30 100.0 35 .............................. ACGAGATATTTCTTATTTTTTGGCTTCTGGTCTTA 1925685 30 100.0 38 .............................. CAAAAAAGAATTGGAGGTGGAAGTATGACAGAAAAAGA 1925617 30 100.0 36 .............................. TTTTTTAGGAACAAAAATATTCTCAACATCAATCAT 1925551 30 100.0 36 .............................. TTTTTTAGGAACAAAAATATTCTCAACATCAATCAT 1925485 30 100.0 35 .............................. ATAGCAAATAAAATCTTTAATGGTGGAGATGTATA 1925420 30 100.0 35 .............................. ATTGTAGACACTTCTATTACTGAAATTTCTAAAAG 1925355 30 100.0 36 .............................. GTCGGCAAATCAGTTTCAACAATATCTGCTATGTTA 1925289 30 100.0 36 .............................. TACATCCGGATTATGACTTTATGATTGCAAATATTG 1925223 30 100.0 35 .............................. TTTATCAAAACTACATACGGTATAACCTGTAATTT 1925158 30 100.0 37 .............................. TACATCATATTAAGCATAAAAGCTGTCTTGCCCATAG 1925091 30 100.0 35 .............................. TAAAATTTGGAATGCAAAATGACAATTTAAAATTA 1925026 30 100.0 36 .............................. ATATACCGACTGTTAGCACAAACCATACTCATAGTA 1924960 30 100.0 35 .............................. ATAACAGCTTCGTACCCGTTGCCTGTGCCTTTATA 1924895 30 100.0 36 .............................. AGAAATGCATCCACGAACGAAGATTAGCCGATACAT 1924829 30 100.0 37 .............................. TATTTAACAATTTAAATATTATATGAGGTGATAATAT 1924762 30 100.0 36 .............................. TATTGTATCCCTCCTTTCTAAATTTTTCCTTGTAGT 1924696 30 100.0 38 .............................. GCTGTAACAGCAGGAATAGCACCAACTGAACCTGAAAA 1924628 30 96.7 35 .......C...................... GCGTGAGCTATCCAGAATGGAAGCAGAAAAAATGG 1924563 30 76.7 37 ....TT.CCG...........A.......T CTACTATTATAATAAATCATCCCGGGTTCAGGATTCG 1924496 30 80.0 42 ....TT.CCG...........A........ TGAAATAACGAAAACACGCATGAATAAAAGAAAAAGAACACC 1924424 30 70.0 0 ....TT.CCG.G.........A.....GC. | ========== ====== ====== ====== ============================== ========================================== ================== 43 30 98.2 36 GTTTGCATATTACCTATGAGGGATTGAAAC # Left flank : AAGAATGGTGGTTAGTATGTATATAATAATGGTTTACGATATTAAAGAAAAAAGAGTAGCAAAGATTTTAAAAATAGCAAGAAAATATCTTAATTGGGTTCAAAATTCAGTTTTAGAGGGAGAATTAACTAATTCACAATTTAGACGGTTAAAGTTCGAGATAAAGGAAAAACTTAATGTGGAAGAGGATTTTGTAATATATTTTATTCTTAAAAATTCTTCACTATTAAAAAAAGAAATAGAGGGAACACCAAAAGTCGAAAATACAAACTTTCTCTGATTTAGCACTCAAGTTTTGCAAATATTTTTTTTATGATCTTTTTTGGGGAAACCCTAAATGACGAAAATATATAGGGGGGTTTTAGGAATTTTAGTTTATATTGAGAAGCATTTGTCTATGCCATTTTCAATAAATTTGATTTGAAATTTTTCAAAAAAAGTAGTAAAATTATTTTTAGCAAAGGATTATAATTCTCGTTTATAATTTTATATTGCTAAGT # Right flank : CGTTAAAGGTGAAATATTGAAAAAGTTAGTAATTGACTCTAAAGATTAAGAGTATGAAGTGCGCAAATATATAGAAAATGCATAACAAATGCTCCTCATGTACTTATAGCACAAGCTAATGAAAACAGACTAACATCTAAGACTCCTTCTCAACTTTCCTTGGAATTTTTGAAAATTATTAAAAGGGAGTTAAAAAAATGAAAAAATTACCGGATTGGATTATTGAAGAACAGTATAATGAATTTGAAAAGTGGATTGATTATGATGAAAATGGTTGGGTTTTAAAACCAAATGCTCTTCAATTAGTCAAGAAACTTTTTGAAGAGTTAACTGAACCAGATGTAATAATAAAAAATTCCAAATAGAGATAAAAAAACTCTAAAATGTTTAGGAAAGATATAGCAGTTTTTAATTTATATATAAAGTTAGTAGGAACATTAAAGAGAGATATTGTGTCTCTCAATAGTATAAAACTTTGTATTGATTATTAATATGATGTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCATATTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //