Array 1 2233-587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025929.1 Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 2232 35 100.0 33 ................................... TCGGAAGAACCCTTGAGGCCCGTTCCGTACATT 2164 35 100.0 38 ................................... AAAAGAACCACTGTAAAACTTCCCGAGGACCAAATCCT 2091 35 100.0 36 ................................... GAACCTCTAAGAGAATCTCCAGCAATAGAAATCGTG 2020 35 100.0 37 ................................... ACCACACGGGGTTTCGTGGCTTGGTTCACGATTAACC 1948 35 100.0 39 ................................... AGAGAGGCCCGAGTTAGTAGAAGCGATGGGGCACTTCAT 1874 35 100.0 34 ................................... AATCGGCAGACAACAGAAGCAGCTGTGCTCCTAG 1805 35 100.0 47 ................................... TCTCTCCGGGGAGGACCTACCCAAAACTTTGGTAGGTTTTATTAACC 1723 35 100.0 35 ................................... TCTCCTATGGAGCTGGAAGCTTATCCTTAAGGACT 1653 35 100.0 40 ................................... TTCCCAGCAAACTGTGCCGTTCGACACTATGCAGAAATGT 1578 35 100.0 38 ................................... AAATGCCACCGTTTACTTTGTCATACCACAAGGGGTGA 1505 35 100.0 41 ................................... TTACCCGCAACTGGGATGGGCCCATGCTCCCCACCGTGGGA 1429 35 100.0 33 ................................... GCGCTGGATTTGATGGCGTCCCCGATTTACCAT 1361 35 100.0 37 ................................... AAAGTTTAGTGCGTTTTGCGTTGTTTTTCACTTTTTT 1289 35 100.0 39 ................................... TTACAATTCAAGTGAAGGGAGCCGAGAACGATATTAAGC 1215 35 100.0 46 ................................... AGTCCCCAAAGTAAAAACGAGCAAGCACTCAAGGGCGTGTACATAC 1134 35 100.0 41 ................................... CATAATCGAAAGATTTGTTTGGTGTGGCAAAGCGATGGTTT 1058 35 100.0 41 ................................... GGGTATGCATCGTAGGGGACTAACACCCCCCCCCTTTAAAA 982 35 100.0 34 ................................... ATGGCACAAAAGTCCTGGGTGCCGCGGTTGCATT 913 35 100.0 35 ................................... TCCCCAAGGCTTTTTGGGCCCCAGAACAACTAGTC 843 35 100.0 38 ................................... TTATTCGGAACGCAAGCAAAAACAGCGGTTACTCTTTT 770 35 100.0 42 ................................... GAGGCGGCCCAAGCGTTAGAGTTAAATTCTCCTAAAGGATCT 693 35 100.0 37 ................................... ACAATGATACAAAGTAACCAAAAATACCGCAAAAAAG 621 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================================== ================== 23 35 100.0 38 GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Left flank : TTATTATTTCCTCTTCTTGGCACTTCTTTATTTGTTCTAACAAACTTGGCGGTAACTCTCCTTCAAAAAGTTTTTGCCAATAGGTAAAGATATTATGAGCCGTTGATTCACTCACTTGAAACATTAGTCCTAAGATTTGAAAGCTTAGATGATGTCTTAAATAAACCAACATTAGAACAATTTGTTCCTCTTCTGATAATTTAGGAGGTGTTCCGCTTCCTGGTTGATTAATCCTAATTTTGGTTTTTTCGATTTCTGATTGGTTTTTCCGATGTATAAGTTTTCCAAGTGCCATCAGTTGTTCTAGTTGTTGGTAGTCAATTCCTAATAGTCTTTTAGTTTGTTTCGGATATTTTTGAATGTATTCCCAAGTGTAGTTTTTCATGGCTTTTTTTGATTTACTATTTGTTTTATTATATCCTATTATTGTGATTTAATTAAATTATGGAGAGGTCTAAAGAAGTCGGCACTGTGGTTTATGAGCAACGCACCTCCATGTT # Right flank : ACTAGCTTGGCAAAACTAGGCTGTATAAGGATTGTACAGCAATTTTTCGTGGGATATTGAAAAGCATAGACATTATTAATAATGATTCGCAATAGTTACCTCAGTCATAAGGCTCAAAGCCTTGCTGGGCAAAGCATCGACGCACCTCAACGAAAACTCTAGATTTTCAGGCATTGTGTCTAACCCGCGAAAAATGTTGAGAAACCCCCCATTCCATCGGCATAAAACAATAGAATTTGTTCCACGTTAATGCCTATGCGATCATTGCCCTAGTACCATCTCACCTTTATAACCCTTAAATCTTTACGTCAAGCTATTTTGAAAGCCTTGCTAGAAAACAGTGTTAGGACAAGTATAATTACTCACTTGCATAAATGAGATGCTCCCGATATTTTAGTTGCTTTACCTTAATAGCAGCAGACTCTGGTAGCTCTGTATTTGTTGCTCAGGGTTGATCTCTCATCATCCTTTCGGTGTTCGCATCAGCACTCCGATTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 3965-3421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025929.1 Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 3964 35 100.0 34 ................................... TATCTCGAGGCGTCCCGCCGGATTGAGAGCTATC 3895 35 100.0 41 ................................... CATACCAGAACCTCCGTTACTCGATCGCTCACCTCGATCAC 3819 35 100.0 38 ................................... GTGATACTCTATCTTCTACTGGTCTTTGTGTCTCCTAA 3746 35 100.0 33 ................................... TATGTGGGCTCCGTTTGGTTGTACGCAACCTAC 3678 35 100.0 42 ................................... ATTCAGGGACGTCTACTATTGGTGCATTTCTCCGCACATTTT 3601 35 100.0 36 ................................... GGATCTAAAAGGATTCACAAAACCTGTGAACAAAAG 3530 35 100.0 40 ................................... GAAAAGATAGCCCTTTGCTACCTCCGACCCGACCCCGACT 3455 35 97.1 0 ..................................A | ========== ====== ====== ====== =================================== ========================================== ================== 8 35 99.6 38 GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Left flank : ATTGGGATGGCTCTCTTGTCATAAATTAGACTCACCATCAAGATATTTATTGCTCCCCAACTTGTCCGGTCTATGGCAATATACGCTAATCCTTTTGTTGTGAATCTCTGCTGCTGTTTTAACATCTCTTTTAGGCAGAGAAACCAGATTTTTTCAATATTCAGAATTTCCAGCTTTAAAAATCTTTTTAGTTTTTTTCTCCGACTCTCAAACAGGATTGGTATTGGTAAGGCTTCAGCTAATATCTCTAACTTAGCTTGCTTTAGTATTTGCAAGGTTCCAACTATCATTAACAACAGTAGATATCTGGCTCGTCCCAGTTCATTTTCTAACACTTTCTGGTATAGTTCACTTATCATTTTCGTTATTTAGGTCATATATGGTAAATATGACTTATCTTTTTTTGGAGTCTGTGTCTGTATTTTATGCTACATAAGCTTTTCAGCTTGCTTGTCCCCCTGTCAGCCTACAACGTTGCCATGGGCCAAGTCTCATGGGCG # Right flank : GACATCTCCAAAAATTTGTAAGTCAGTCACAGCAAGGAAGACAGGCAGATTAGACCAAGAGTCAAAATTAGCTCTAAAAACCGATTAATCAGGGTTTTAAGAGACAAAACGAATTTTGACGGAAAACTATGGCTAATTATAACGTCAATTACTTCCCCTGATTGCTCCCATTCTATTACTTCTAAAATTAGCGCACTAATTCTCAACCTTACTAAGCCACAAACGGTAAGTAAAACCGATTTATATCGACTTTTATTTAATCTAAATCTTTCTTGAACTACCTTAAATACTTTGACAACTCGAATTAAATGCTCAACAAAAATTCGCCGAGATGATAAAACTTTATTTTCTTTAATTTGATTCTCGGTTAATTCTCCATTCTTAGGTTTTTTATCAGGAGTTCTGATTTGATTTTCTCCCAGGTAAGCTTTATCTCCAATAAAAGTTTGTTGAGAATCGAATTTGCTTAAAGTTTCCCGACAGATTTTTATGTCGCTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 6109-5285 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025929.1 Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================ ================== 6108 34 82.9 42 CAAA..C.-.......................... TGTCTTCTGTTTTGGGTTTTTGTTTTGGTTGCGTGTGCAAAC 6032 35 100.0 31 ................................... TGTGCAGAAAATCGGTATCGGAGCATTAGAC 5966 35 100.0 34 ................................... TATGGAATATGGGTATGGAAGCGTTACCTATATT 5897 35 100.0 37 ................................... GAGAAATCATATCTCAACACCTTTATTGTGGAGTATC 5825 35 100.0 37 ................................... GGGGCTATCTTCCCCAAGGCCTTTTGGGCCCCAAAAG 5753 35 100.0 36 ................................... ATGTCGAAGATGCATCGGATTTAGTGGAAACTAAAC 5682 35 100.0 36 ................................... AAATAAAAGAAAAAGTGAGACAATTCTCCCTTTGTA 5611 35 100.0 33 ................................... ACGATGACTATATCGTTCTCCGTTTTGCAGAAG 5543 35 100.0 36 ................................... CTGTCAGCAGGTCAGGTATGGGCGATTGAGCATCCA 5472 35 100.0 35 ................................... GTTGAGTTCTGTCATCAAGTGATGAGTACAATTTT 5402 35 97.1 48 .....T............................. AATCCATGCAAGAGTGCATGGATTTGTCGGAAGATGAAGCCAAGGCAA 5319 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================================ ================== 12 35 98.3 37 GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Left flank : AGCACAAATAGAAGCTTATTATGACTATACAGGATACTATCCAGAATCAGTTCATGTGGACAAAATTTATCGAACCAGAGAAAACCGAGCTTGGTGTAAAGAAAGGGGAATCAGAATCAGTGGTCCCCCATTAGGAAGACCAGCCAAAAATGTTAGTAAAGAACAAAAGAAACAAGCTACCGATGATGAGAGGATTCGGAATTGTATAGAGGGCAAATTTGGACAGGGGAAAAGAAGATTTAGCTTAGGTAAAGTGATGGCTAAACTTCCTCATACTTCCTTTTCAGCGATTGCTATTACTTTTTTAGTCATGAATCTTTCTAACCTGTTGAGGCAGGTTTTTTGGGCTTTTTTATGTCTGAAATGGAAAAACAGCACTTTTTCTCGGTCAATGATTAGGATAAGTTATAACTTAAAAATTAATCAACAACTAAAGCTTATGCTTGTAGCTAAGTGAAATCATTGATTAAGAGACCTGTACTTTTCAATGACTTTTTCAG # Right flank : ACCTACAACGCTGGGAGGGGGACAAGCCAGCTAGAAGGTAGATAGAGCAAGCGATATAGCTCTTTGTCCCTTGATGTAATCTTTCAACCGATAGCGGCTAATTTGCATTAGCTCTTCTATATTTTTTTGGAACATTTGATGTAGCTGGAGCCAATGATAGAGATGTTGACCCACATAAAAACTGCTGTGTCTGCGTTGACCTTTATATCTTTTTTCAGGTCTTGTGACATATTTTTGGATTCCCATATCCTTAATTTTTTTACCTTGTAGTGTGGCACTTGTATAGGCGATAGCTATAACAATTATCAGCTTTGATAAGTATTGGGGTGCTAATTGAGAACCTTCTAAGCTATAGCCTCCCGACTTAAAATCTCGGAACATCTCCTCAATATCAAATCTTTTTTGATAGGCAATTATTGCCGTCTCTAAATCCACAAAATTTGTCAGAATATACCAAGGTTCTTTTGTTTGAAAACCCCCATAGGTTTTTTTCCACTTAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 4 27049-23191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025929.1 Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 27048 35 97.1 38 .C................................. TGGTATCCAAAGTTTGGAAAGGTGTACAGTGTTTTGAC A [27043] 26974 35 100.0 40 ................................... TTTGCAGCCGCCATCATTCTGACCGTATGGGGAGGCCCAT 26899 35 100.0 38 ................................... GCTGTCCTTGCCAGCATCCCAATCCCTTCTCGTATCGT 26826 35 100.0 38 ................................... AATTCAATTGATTTTTTTGATAGTCCACCCATACCTTA 26753 35 100.0 35 ................................... CCTGAGAAACACACGCTGTCACTGACCCTTCCGGT 26683 35 100.0 40 ................................... GCTCCACAAATGCTTTCCTTGACGGGGAAGTTGGTGTGGT 26608 35 100.0 39 ................................... TTGAATGGACTATATGTGTCCAAAACGCGATACGCGGAA 26534 35 100.0 40 ................................... GATCACGTAGGAAACGCATAGGATGCACCACGGTGTATCC 26459 35 100.0 38 ................................... AAATCTATACCACCATCGGTTTAACTGCTGCTGCTACT 26386 35 100.0 34 ................................... GCGGTAAGTTTAAGTTGTGCAAATCGTACGCACG 26317 35 100.0 40 ................................... TGCTAAACTTCGCAGGGTTCGCCTTGGTAGTAAAAAACGA 26242 35 100.0 40 ................................... ATGGTCTAGAGGAATATCTAGAATACACGGCCATTACTGA 26167 35 100.0 38 ................................... ATTCAATTCAATGTGTAGTGCTTGAACAAGAGGTCACG 26094 35 100.0 35 ................................... GAGATAAGGATGCCTTAGAACTCGCGGTTTTTCAC 26024 35 100.0 33 ................................... ACTGCAGCTTGGGCGACAAAGGGAATTTTGTTG 25956 35 100.0 44 ................................... GGTTCCATTTTGGAAACCTGGATCACGGGTAAAGCCTACCAGGG 25877 35 100.0 32 ................................... CCTCTTGCCAGTAGCGGCAGTAATGGTTTTTC 25810 35 100.0 37 ................................... GTCAACTATCCGGGACCAGAACTCACAGTAAATGACA 25738 35 100.0 36 ................................... TCGCATTAATCGAGCGTTGGCGGTGGCTTTTACTCA 25667 35 100.0 39 ................................... AACTATCAAAGACGAAATAGAAAGAATCTATTTCGTTGT 25593 35 100.0 37 ................................... CCTCGCTTAAGTGGGGATATCTGGGACAATTCCACAG 25521 35 100.0 34 ................................... CATGAAAAAAATGCCGTTGTCTGTTTTTGTTCTC 25452 35 100.0 35 ................................... CATAGTAGGCGTCATAATAGCAGGAATAGTCTTTT 25382 35 100.0 43 ................................... AAATGACGAGAAGGAGTCCCTTCATTTTCTTGGTGACTTTAGC 25304 35 100.0 40 ................................... TTCTTGTGCGACAACAAGTTAGCGTTCTACCCTCCCCAGC 25229 35 100.0 40 ................................... ACGACGGCTGTTGTCCTGGATTTTGGACTTTACGGCTTGG 25154 35 100.0 36 ................................... AACTCAGCCCAAAATCAGCAAAATTGGTTGGAAACA 25083 35 100.0 39 ................................... TCTCCTTTAAGGAGAGCGCCGTTACCCGCAACTGGGATG 25009 35 100.0 35 ................................... ACGAAGAGCTCCCTGGGGGTACTGCTCCCGACAAA 24939 35 100.0 43 ................................... TTATGTCGACACCATGACGGGAACTGAAGGCATCCAAAACAGT 24861 35 100.0 35 ................................... CCGAAGTGCCAAAAGTGGAAATAATAGTATCCCTC 24791 35 100.0 40 ................................... GTTATCAGTAAAACAAAACACAAACAGGAGAAATCATAAC 24716 35 100.0 39 ................................... TTTCCGGGGAAAGTAACCCTTCGTGTACAGGGGAGCAAA 24642 35 100.0 38 ................................... TCTTATCCCCGCCCCCTCTTCTCCACCCCCTTGTGAGG 24569 35 100.0 42 ................................... TTAGCCTTTATCGAAAGATTGGTCGATGGCGAAGGATGGGAT 24492 35 100.0 35 ................................... TATGTTTCGGTTTCATGTTCTGGGTAGACGACTTC 24422 35 100.0 39 ................................... AGTTTTAGTGGAAGAATTGAAAGGAGCGAACCTCCAATC 24348 35 100.0 43 ................................... ATGGCACGGTAGCAAAGAATAGTGAGTTCTGTGCGATACAACC 24270 35 100.0 43 ................................... TTTTAAGAACCACTGCACAGATTCACCGTTTGGTGGGCTCGTG 24192 35 100.0 33 ................................... CTTCTATGGGAAGATACAACGCCGCCAAAAAAC 24124 35 100.0 33 ................................... ACAATTTGGTTGTTTGTGCTTAAAAAAGCACAG 24056 35 100.0 34 ................................... GTGCTCAAAAAGCCTTGCCAAGCGTAGTTTAGAA 23987 35 100.0 43 ................................... AAAAGATACAGCAGAGTAAAACCCTAACCCCCCGGCCCTCCGG 23909 35 100.0 42 ................................... AATTGGATACCAAGTAGTAGAATCAAAGTATGATAAAAAAAG 23832 35 100.0 43 ................................... TTGATTTCCTCACGTCACCGGGCGTCGAGGAAATTCTAACCCA 23754 35 100.0 38 ................................... GGGTTTTTTATTTTTCAAGTTGGAAAAACCTCGCTGTC 23681 35 100.0 41 ................................... GATCCCGATCCCGATCCCGATCCCGAAGGGGAATGGAAAAA 23605 35 100.0 39 ................................... CTGTATGGGAAAAAATTTCACAATGGACAACATGGAGAC 23531 35 100.0 38 ................................... ACCCGTGTTTAACATCAAGGAGCAGCCCGACGGCGGCA 23458 35 100.0 40 ................................... AGAAGGGATGAGCTGGAGCTCTTTAAAACCAACCAAAATG 23383 35 100.0 49 ................................... ACAGAAGGAAGCCGACTACGCTGGCTTACTCCTCTGTATCCAGAGGAGC 23299 35 100.0 39 ................................... AGCGGTTTGATGATTATACTCGCCCCGCCCAAAATGTAA 23225 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================================= ================== 53 35 99.9 39 GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Left flank : GAATGACTGAAAAAGTTACCCACTCTCAAATTTCATCTCAGATTTCTTACCGAGAAGCCATTCAATTACAAATTCGGCTGTATAAACGTAGCTTGCTGTCATCTATAGCCTATGAACCTTTCTTTCGAGCCTCCTAATGTTAGTATTAATTGTTTACGATATTCCTGACAATAAAAGACGCACTAAATTATCTAACTTTCTGGAAGGATACGGTAAAAGAGTACAGTTTTCTGTGTTTGAGTGCTTTTTATCTTTAGCGGAAATGCGAGAACTTTATGAAAAAGTCAAAAAAAAAGTTAAACCAGAAGAAGATAATGTTAGATTTTATTGGCTCTCAAAAGATGCTACCTCAAAAACTTTAACTATCGGTAGCAAACACCCTGAACCCCCTCCACAATATTATGTAATCTAGAAAAAACAAAATCTTATCTTTCACCTTTATTAGTAAAAAAATCTCCTTAGAAAATTAAAGTAGGAGATTTTTTATTCACTAATCGTTA # Right flank : ACTAGCTTGGCAAAACTAGGCTGTATAAGGATTGTACAGCAATTTTTCGTGGGATATTGAAAAGCATAGACATTATTAATAATAATTCGCAATAGTTACCTCAGTCATAAGGCTCAAAGCCTTGCTGGGCAAAGCATCGACGCACCTCAACGAAAACTCTAGATTTTCAGGCATTGTGTCTAACCCGCGAAAAATGTTGAGAACCCCCCCATTCCATCGGCATAAAACAATAGAATTTGTTCCACGTTAATGCCTATGCGATCGGGAGCATCTCACCTTTATAACCCCTAAATCTTTATGTCAAGCTATTTTGAAAGCCTTATTGGAAAACAGTTTTAGGACAAGTATAATTACTCACTTGCATAAATGAGATGCTCCCTATGCGATTCCAGCTTTAGCTTATCTAGTGTGCAAAGCTAGTTTTTGAATATCTTTTTGTCAACTTCAACCCTTAAAGTATATCTTATATTAATTTATGTCCACTTTATATATAGTAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 5 107123-105490 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025929.1 Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 107122 37 100.0 34 ..................................... CCAAATCCAACTATCGAATTTTTTACAAAGCCTC 107051 37 100.0 34 ..................................... AAGTGTTTCGTAGCCGCAACGCTATAAAACTCTT 106980 37 100.0 36 ..................................... ACTCAAGTTGGGGTATCCGGTGCTGATTTCTAATAA 106907 37 100.0 36 ..................................... ATTTGAATATAAAGAGTTCGGCTTTTTGTTGGCCTG 106834 37 100.0 35 ..................................... TGGTGTAAGTAGTCGTGTAAAGGCTTTTTAGTCCT 106762 37 100.0 37 ..................................... TTCTTGGCGATTTGTTCCCCTGTTTTGTGGAACACGG 106688 37 100.0 35 ..................................... TGAACCACCAAATCCTTCATAATAGAACTATCCTT 106616 37 100.0 36 ..................................... GGTATTTGAAATTGGGCTGATTCAGTTTTGATAAAA 106543 37 100.0 34 ..................................... AGCTATTGGTAGATGAACGGATTTTCCCTCTTTA 106472 37 100.0 35 ..................................... AGAAAAAGCCTCGCTTTTGGCGAGGATTCAATAAA 106400 37 100.0 40 ..................................... AGCTATCTTTGCACTATTTCCTCACCACTGGAAAACCCTT 106323 37 100.0 35 ..................................... TGGGATAAATGCTCTGATCGCGATCGGGGGGACAG 106251 37 100.0 34 ..................................... GCAGTCGATCGCACGAAATCCTCACCAGAAATCT 106180 37 100.0 36 ..................................... TTTTATCGATTAAAAGAGGATGGAATATAAAAAAAT 106107 37 100.0 36 ..................................... TAACCCTGAAAACAACTCATTTGACTATTAAGCAAA 106034 37 100.0 36 ..................................... TTTCCTATGTCTGACCGTTGGGTGGGGAGATTGAGT 105961 37 100.0 36 ..................................... TCCGCCTGAGTCGCCCCAGTCACCCGGCTATTAATT 105888 37 100.0 36 ..................................... ATTGTAGTCGTTCCTCAGATTGGGAAATCTCTTAAT 105815 37 100.0 35 ..................................... CTTTGGTTAAAAGACAAAGAGGCTCCCGTCTCCAA 105743 37 100.0 37 ..................................... ACTAGATTAATCATCGATGGTTTACCGTGTCCTAACC 105669 37 100.0 35 ..................................... AACAAGATCACTTATCCCCGTGTCACCTATAACGG 105597 37 100.0 34 ..................................... TTGGGAAAAGATGCTCCCTCAAGCCTCGGATCAC 105526 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 23 37 100.0 36 GAAGCAATTAAGCTTAAGCCTTATTAGGGATTGAAAC # Left flank : AATATTCTGATCCGTGGACTGCAAGATGAGTTTTTAAGAGCTATTGGCTCTTTAATCAAGTTTCCTGTCTCTTTGATTGGAAAATACCCCGGTTTAGAGGGGAAATTTACGCCTGATCTTGATGCAAATCAAGAGTCTATCGGAGACGCGCCGATAGAGAATGCCGAACACTCGATTAGTAAGCAGATGAAGCAGGAAGGGAATCGCACCCCCACTCAGTCCGAGAATGGCTCGCAATCCCTTATTTTTTCTTCCGCCCCACCTCAGCCGTGCGGGGATAGCCACGGCAAAAACAAACCAAAAGCCTTACCTGATAAGGCATCTAAGCGAAGTTCCAAAAAACCACGGGGCGCAATCCCCGAAAACCCCGACCAGCTTACGATCTGGGATTTACTAGACTAATTTTTTGAACCGAGCAGAACCTTGAAAACTGAATTTTTAATGATGGGGCGCAATCCTTACCCGAAATCCTTTTACATCAAGGGTTTCGGGAAGATGGG # Right flank : TTTCACCGGTCAATTGTTGCTACTTATGATCTGAGCGAAGCAATTAAGCTTGGCTTTACCGAACCTGTCATGTAAAACTCTCAACAACTCGTGCTTGTAAAGCTTGTATACTAAGGCTTTGAGTTTTTGTTAGATTGATATTTATCAACTTTAGAGCATTGCTTGGCAGAGAGGGAGCTTGAGGAATTTTCTACAGTGTAAGTTCGGAAGAACCATTTACATTCAGGGCATTGCATTTTGATTTCCTCCATTCATATCTCTATTATGCAACGCCTGAAATTCATTTTTCGCGATCGATTCGATCTCTTTTTTCCCGTTTCGCATCTTTCGGCTATCATCCCCCCGTTCAGCAACGCCGCACTTATTCACGACGATCGTCGGTACGCGTACCTAGACCAACCAACGCGATCGGCGATCGCTGAAACAATTAGACAAAATCAACACGAATTTTGGGGATTTGAATTAAGTGCCAAGAGTCCACGCTCACATCAATAATTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCAATTAAGCTTAAGCCTTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1231115-1231531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012375.1 Microcystis aeruginosa NIES-2481 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1231115 37 100.0 41 ..................................... AGTAAGAGTAGGGCTAATTCATGAATTAGCCCTACTTTTTT 1231193 37 100.0 37 ..................................... TTCACTGGCTCACCACCATGCCAAGGATTCTCAATAG 1231267 37 97.3 39 T.................................... TCCTTGCCATTATTAGCCCTGCTCGGGCCCAAGAACTCA 1231343 37 100.0 38 ..................................... CAGAGCCGTAAAATCGACGGGCAGAAAATGAATTCTAC 1231418 37 94.6 40 T...............G.................... TTAGTCTGATTTTTTAATCAGTGTAGAAAAGCCCCCCTCA 1231495 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 98.6 39 AGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Left flank : TCGGCGATTATAGTTGGATCGGCGATGATGTGGTGATTTATAGTTTAGATAATGTTACCATCGGCAGTCATTGTGTGATTTCTCAAAAATGCTATCTTTGCACTGGCAGTCACGATCCCGGCGATCGCTCTTTTGGTTTAAAAACCACTCCCATCCTCATCGGTAATGGTACATGGATCGCGGCCGATTGTTTTTTGGCTCCGGGGGTAAAAATTGGCTCTAATGTTGTTATTGGGGCAAGAAGCAGCGTATTTGCCGATATTCCCGCTCAAAAGGTCGCTTGGGGTAGTCCCTGTCGTCCTCAATACGATAGAAAGATGAATTCTTATAGTAGTTAAGCTAAGAGGCATTTTTGGCGGTCTTCCGCTCGCTTTTGCCCCACTGTTTCCCACGGGACATATTAAGCTGTTCGTAATTTAATTAGCATTTTTATCGATTTTTGTCAAGATATATTTGACACAATTTATTAGAAAAAGGGTTTCTAAAGAAACCCTTTTTCT # Right flank : GAGTACCCCTTGGAAAGTCTCATCGAGAGGGGAAGACAGACCCCCAGACGCATCTCCAAAAAGGTGGTATTGGGGGGGGGTAAAAGTCCCGATACCAAAGGGTAGAACCCTGACTGGGAGAGCAATCGACACATCTAACCAGAGAATCGGGGTTTTAGGTCGGGGAGAGGCTGCATCGATTTTCAACCAAGAGTTAGGGGACAAGCTCACCGTCCGTAGAGATTGGGGGGTGGTTGAGGAGGAGAACCTCCCATCACCAACAATCTAGAGACAGCTTCTTCGGAAATCCTATAGAAGCGCTCATCATCCTCTTGAGGATTGACCCTTTCTACTACTTTAGCGTACAGTTTCCGCCTCTCGATGTGTAATTAATTTTGCTTAAGTAGGGATTGCTGAATAAATCTAAAAACCTTGTTGGGTAAGACTTTTAGACTTTTTGTCAATCAAAAAAGACCAGAGATGGGAGTGATCAGGGGGAAAATTTAGGGACTTTTTCCCTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 3600775-3600592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012375.1 Microcystis aeruginosa NIES-2481 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3600774 37 86.5 38 AGAA.C............................... AGCGTACCGTGACACTTCCGGGGTTGACCCGGAGACGT 3600699 37 100.0 34 ..................................... CAGCCATAATTACCCCTCAACAATCCAATATTCA 3600628 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 95.5 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : GATGAAGCAAGAAAGGAGGTAAAAAGAGAGGCAGCTAAGATAAAAAACAAGAAAAATAAAGAAAATATCTTAGCAGGAATAGCCAAGAGCAAATATGCCTTATTAAAGAATGAAGGAGACTTAGTAGAGAAAGAAAGGAAAAAATTGGAAGAAATATATAAAGTGTCTCCAAAACTTGGGGAAATGCACAAATTAAAAGAGGAATTTAGAGAAGTATTTGAGAAAAATACGGAGGGGAATGAGGGATTATTTGCCTTGAGTGATTGGCTCAAAAAGGCGATGGCTTACTTTCCTAAAAGCTGCCAGACAATTCGGCGGTGGATTGACGAAATAACTGCCTATTTTGATAACCGAACAACCCAGGGAACAGTTGAAGGAATTAATAATAAACTGAAGGTGATTAAAAGGAGAGGCTATGGATTTAGAAACTTTAAAAACTTTAGTCTTAGATGTTTATTAAATTGGCATTTTGCTAGTTGATTTTACATGGTAAGTTCGGA # Right flank : AAAATAATTGAAAACAAAATCCGCAGCACTAAACCCTTGTTCCAATTATAGCAATTCTCTGACTCATGAGGTACAGTAGCAACAGTGAGTAAACCAATTGCGAATATCTTTTTGAGTAACTTATAACATAGCTAATTCAATCCCTTCTATTAAGTCTTTGTAAGTTCTCGCCTTCAGTTTTCTTAATATCGCTTTGACTTTTGACCAAAAGTTTTCAATAGGAGAGAATTCGGGAGAATAAGGAGGTAAATAGATGAGTCTAGCTTTTTCTTGTTCAATTATTTCTCTGACCATTTCTCCGAGATGAATCTTGGCGTTATCCATGAGCAAACAGTCTCCTTCTTTAATTTTTGGCAGCACTTCCTTCAGAATAAATCCTTCAAATGTTACCGCATCCACTGCACCGTATATGTTGACTGATGCCACAACTTTTTCTAAGCTTATAGCACTAATTATTGAAATATTTCTCCCTCTTTTTTGTGGTTTTCTTCCCCGATCTC # Questionable array : NO Score: 8.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 3 3607858-3602218 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012375.1 Microcystis aeruginosa NIES-2481 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3607857 37 100.0 34 ..................................... AAGGGACATTGCCTAACGCAATCACGTTAGTCAC 3607786 37 100.0 36 ..................................... GTGACTAATGATATTGTACCAGGATCAGACTATCAA 3607713 37 100.0 40 ..................................... GTTGAAGAAGATTGACCGCACCCGCCACATTATTCTGAGA 3607636 37 100.0 34 ..................................... AATAAAACCGCCAGCAAACAATGTTTGATGGGCA 3607565 37 100.0 35 ..................................... AATAGTCCGATTTAGACGATCAGCCATGCGATCGC 3607493 37 100.0 33 ..................................... CGGCTTGAATGCCCACATATTAAAGCCATTGCT 3607423 37 100.0 34 ..................................... ATTAGATGATATTAATTCTATCGTTATCAGTGGA 3607352 37 100.0 41 ..................................... TCCGTAAGGTTTCATGAGAGAGAGGTAATCGGTCGTTCCAA 3607274 37 100.0 35 ..................................... AGTGACACTTTTAAACAGTCAGTAGAGGACGGAAC 3607202 37 100.0 35 ..................................... TTGATTAAGATGCCCGATTCCCCTTCATAAAGAGA 3607130 37 100.0 33 ..................................... TTTAGGGTATCTGGGTTATGCAGTAGGTAGCGT 3607060 37 100.0 34 ..................................... TTTTTGAAACTTGCTTCTAGCAAGACTTTCAGAC 3606989 37 100.0 37 ..................................... AGATAACAATTATTATCCTTATTTTCAATATCAAAAC 3606915 37 100.0 34 ..................................... CGATTTTAAGTATGAACAAATCGAGTCAATGCTT 3606844 37 100.0 36 ..................................... CAAATCTTCTTTTATTTCTCTCAAATTCTTTTTCGA 3606771 37 100.0 34 ..................................... CATCTATTGAGTCAGTCTCTACAGTTTCCTGATT 3606700 37 100.0 35 ..................................... AAGGGACTGTTCTTAATCACATAGCGACGGGAATA 3606628 37 100.0 34 ..................................... AGTAGAAGATGGAACCGATGGGAATTTTATGTTA 3606557 37 100.0 33 ..................................... AGGGGAAGGAAAAAGCATCATCGGCCGCGCCAT 3606487 37 100.0 35 ..................................... TCGCTGGGGGGATAACCTTATCCCCCTTTAATGCT 3606415 37 100.0 34 ..................................... TCGATCGCCGGTCGGGCCGGAGGGGGAAGGGGGG 3606344 37 100.0 35 ..................................... GGAAAACATCAAAAAACTAAAGGAAACCAGCGAGG 3606272 37 100.0 35 ..................................... ATTCTACTATGATAGCACAAAAAAAATCTAATAAA 3606200 37 100.0 34 ..................................... TCATTGCTTAATAAATAGTTTGACGTGCCATGAA 3606129 37 100.0 34 ..................................... ACAGTTGCATTAAGGTCTGGCAAGCAAAAAACAG 3606058 37 100.0 37 ..................................... ACAAAATTCAAAAAGAAATAGAGAAGATAGTATTAAT 3605984 37 100.0 34 ..................................... CACTACTTAGAATAAAACTCTTGACACTATACAA 3605913 37 100.0 34 ..................................... TTAGTGGCAACAGATAAAACAGTTTTTCTGATAG 3605842 37 100.0 34 ..................................... CAAATCTTCTCTTATTTCTCTCAAATTCTTTTTC 3605771 37 100.0 35 ..................................... AGAAATATCAAAATATGGACTACAAAAAACACCAT 3605699 37 100.0 33 ..................................... TTTCTGATAGATAAAAGCGATGTAAACTATCCA 3605629 37 100.0 34 ..................................... CCCCTGCTAATAGTTGTTTTAGGTCGGTTGAACC 3605558 37 100.0 36 ..................................... CCGCCTTTGATTTCAAATCCCGATGATTCCAGGGTA 3605485 37 100.0 36 ..................................... TACCGATTTATCAAGGATACGGGTATCGCACCCAAT 3605412 37 100.0 34 ..................................... GCCAATTCCTTGAATTATGCCGGTCTGGTAAAGG 3605341 37 100.0 36 ..................................... AGGCATTTTTTCTTGCTTCTAAATAATGGTTTTTTA 3605268 37 100.0 36 ..................................... TCGATCAGGATACGAAACCCAAAACCGTTAAAAACG 3605195 37 100.0 34 ..................................... ACTAATAAAAGTTACATAATCTTTTATTTGTACT 3605124 37 100.0 36 ..................................... GACAATTCTGTAAATGATATAATCGCCGGTGTACTG 3605051 37 100.0 35 ..................................... TAAAGAGGATTCTAGTAAAGTTCTAATTGCTACCG 3604979 37 100.0 34 ..................................... ACGATACCATTTAAAGGAGTCGCTAAATTAGCAG 3604908 37 100.0 34 ..................................... CGGGGCAAAAGACTTGACCGGCAACGGGAACAAT 3604837 37 100.0 36 ..................................... AGATAGAGACGGGTTTATTTTTCAGCATCTCACCTA 3604764 37 100.0 34 ..................................... TTTCTTGATTGCTTTCTTGAGTTTCTTGATTGAT 3604693 37 100.0 34 ..................................... TTTTACATCTTAATCCCAATTCTTTTGATCCTGA 3604622 37 100.0 35 ..................................... TCATAAAAAACCACCGCTTCCTCATCAGAGGAAAC 3604550 37 100.0 34 ..................................... ACTTCCTATTTCTCCCAATCTCGAAAAAATTCTT 3604479 37 100.0 35 ..................................... ACCAGCTTGAGAAGAAATATGGAAAGAGTAGGTTA 3604407 37 100.0 38 ..................................... AAAATCCCACGAGTTACCTTCGGGTTCACCCCTTTTTC 3604332 37 100.0 33 ..................................... CTTAACGAGACAGGGCTTGAATTATTAGACCTG 3604262 37 100.0 35 ..................................... AAGGCTAAAAACAGAAAAGAAGCATCATCATTCTT 3604190 37 100.0 35 ..................................... ATCGAGTGCCAATTCTCAAAGTGTCACAGTTAGAT 3604118 37 100.0 34 ..................................... AGCGATTGGATATCGATCGAGTCTTCTAAATTAT 3604047 37 100.0 33 ..................................... ACGGATTTATTTTATATTACCAGCGACCCTCGA 3603977 37 100.0 35 ..................................... TTGTATAAAGTATGTATAAGTATCTTGTATAAAGT 3603905 37 100.0 34 ..................................... ATCGAGTACAGATAGGGTAAAATCCTGGCCTTTT 3603834 37 100.0 34 ..................................... CGAAAATCAACACATATATGTGTTGATGGACTTT 3603763 37 100.0 35 ..................................... CACGGGCTAAAGTAGTATTCGCGGAACGTCTATAA 3603691 37 100.0 34 ..................................... ATAATCACAAATAGGTATAATTGCAGTATCAAAC 3603620 37 100.0 39 ..................................... CCATCGACTTCATCACCAAACATAATGGTATTTTCCCAA 3603544 37 100.0 35 ..................................... TCCTTAACGGGCGCGTAGTAGGGATGACCCTCACT 3603472 37 100.0 34 ..................................... AAGTTTTCTGGCAGTCGTACCGACTCGGATCCGA 3603401 37 100.0 36 ..................................... GCCCAACTTCGAGGAAAAGATCGACGCGGCGATCGA 3603328 37 100.0 34 ..................................... ATAGATAGCTTGAGTAGATAACCGTCCGTCCCGG 3603257 37 100.0 36 ..................................... CTAGACACTCCCGGCCCCAATCGAAAGAAAAAGAAA 3603184 37 100.0 35 ..................................... AACGATATTATCGAGTGGATACCAAATAAAACAAG 3603112 37 100.0 34 ..................................... ATCGCGCCATTCTAGCCTTAACACTTTGCTGATT 3603041 37 100.0 34 ..................................... AGTTTCAGGCGCGACAGACCTGACTGGCAACGGG 3602970 37 100.0 33 ..................................... ATCTATGGGGATGAAATCGACGGCACGATACAG 3602900 37 100.0 34 ..................................... AGGTAATCGTAAATCGATCCGAGTGCTGCGGGGT 3602829 37 100.0 35 ..................................... CGATCCTAGAAATTACCCTAAAATCTCTAGAAATA 3602757 37 100.0 35 ..................................... AAACAACGAGATTAGGGCATCCTTGAGTGTTCCGA 3602685 37 100.0 34 ..................................... TAATTCGCCTGATACCGTCCCTAGTCAGTTACCT 3602614 37 100.0 35 ..................................... CAATTCAGCAGTATTTTTAAGCATTAATTCCACTT 3602542 37 100.0 34 ..................................... TCCTACAGAATTGGGCTAAAAATAGCCGAAAAAC 3602471 37 100.0 36 ..................................... CCCCTGCTAATAGTTGTTTTAGGTCGGTTGAACCGT 3602398 37 100.0 35 ..................................... GGGATATGTGCTATGTATCGACTCTTTACACCCTA 3602326 37 100.0 35 ..................................... AATTTTGGGGATTTAAGCCAAAATACCCTGAATTT 3602254 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 79 37 100.0 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : CAAACAAAAGAACCTTGGTATATTCTGACAAATTTTGTGGATTTAGAGACGGCAATAATTGCCTATCAAAAAAGATTTGATATTGAGGAGATGTTCCGAGATTTTAAGTCGGGAGGCTATAGCTTAGAAGGTTCTCAATTAGCACCCCAATACTTATCAAAGCTGATAATTGTTATAGCTATCGCCTATACAAGTGCCACACTACAAGGTAAAAAAATTAAGGATATGGGAATCCAAAAATATGTCACAAGACCTGAAAAAAGATATAAAGGTCAACGCAGACACAGCAGTTTTTATGTGGGTCAACATCTCTATCATTGGCTCCAGCTACATCAAATGTTCCAAAAAAATATAGAAGAGCTAATGCAAATTAGCCGCTATCGGTTGAAAGATTACATCAAGGGACAAAGAGCTATATCGCTTGCTCTATCTACCTTCTAGCTGGCTTGTCCCCCTCCCAGAACATGGATCGAGCGAAAAAAGGTTGTACCAGCTTTACA # Right flank : CTGTAATCGAGACGGGAGTATCAATAGATGTTGGCTCTTCCGAACTTGTCATGTAAAATTAAAAAAAAACAGACAATTATTGCTGACCAATAAAACAATAATTTATCTTTAAAAGCTGACTATGCTTGCAATACAGCAATTTATTGTTTAAAATATAGACAGCCAAGACCAGCAATTTTAGACACAAGCTATACTTATGCCATCAAATCCACAATTAAAGTTAATGACCGAGCTACTTCACCTAGAAGGAGTTGTCGTTACCAATTATCAAATTATTACCGATATAGGAATTGTTTTACATTTAGAAAATATGTCAAGAGAAAGCCAGTGCATTCATTGTGGAAGTAAAACGGAAAAAGTTCATCAAAACAATGAATTAACAATCCGAGATTTACCCTTTGGAGAACAGGCATTATATCTGAGAATCAATCGTCGTCAGATGAGATGCGAGAAATGTGGGAAAAAATTCACAGAAGAACTAAATTATTTGCCGAAGAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 4 3609867-3609178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012375.1 Microcystis aeruginosa NIES-2481 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3609866 37 100.0 42 ..................................... AGTCATTTTTTGGTACTCCTAAATGGGTTAATTACTGATAAC 3609787 37 100.0 34 ..................................... ATCGACTGTGTAAGACGTGACAATGGCGAAAAAG 3609716 37 100.0 34 ..................................... CTTATTTTGCCAACTTCCAGAGATATTGACATTA 3609645 37 100.0 38 ..................................... TCCACACTGCAGCAACACCGACCACCACAATCGCACTT 3609570 37 100.0 35 ..................................... CTATTCTCGTAATAGAATAGACAATATTTTGTTCT 3609498 37 100.0 33 ..................................... GAATCCTGATCATGGGTAATGCTCACATACCAC 3609428 37 100.0 36 ..................................... CGGCGTACCAAATCTGGACACTCTTGCAACACCAAA 3609355 37 100.0 33 ..................................... ATTTTCCTTGTCTGGAGTACCAATCAAGCGAAA 3609285 37 100.0 34 ..................................... TTGTTTAATTGCTTTTGTGCGTCAGTGGGCAAGG 3609214 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 10 37 100.0 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TCGAAAGTGAACCAACATTGACGCTTCAAACCGGGGTTCATTGCTGTAGGATGAAAACCCCAAGAAGTATTGTAAATAAGGATTTTCTTTGATTTGTTCTACCGTTTCTCTATCGCTTGTTCCTAATTTTTCTTTAATAATTAATGCTCCGAGTGCTGTCCTGAATGTTTTGGCGGGTGTGCCCATTTCTTCTGAAAAAAGTGATGCGTATTCCGCTTCAAATTCTGACCAGGGAATGAGGTTGGCCATAATTACCCAACGATTGTCTTGGGATAATTTCCCCTCAAAGGGCAGCTCGAAGTTTTCTGGTGGGGTTGAGGGTAACTCGCTTTTACGGTACATTAGCACTAATTAGAGAAGATGCAAGGGTGATGCAAGGGTTTTAAGAGATTCTAGCAGATTTAAGTGCATTTGGGAAGCTCTCAATCAAGCTAAAAGCCCTTTCCTGTAAGGTTTTTACCATTATTCAGCAAACCCTAATTAGCTAAGGGACAATAGAT # Right flank : ATGGATCTGACAGGGGGACAAGCAAGCTGAAAAGCTTATGTAGCATAAAATACAGACACAGACTCCAAAAAAAGATAAGTCATATTTACCATATATGACCTAAATAACGAAAATGATAAGTGAACTATACCAGAAAGTGTTAGAAAATGAACTGGGACGAGCCAGATATCTACTGTTGTTAATGATAGTTGGAACCTTGCAAATACTAAAGCAAGCTAAGTTAGAGATATTAGCTGAAGCCTTACCAATACCAATCCTGTTTGAGAGTCGGAGAAAAAAACTAAAAAGATTTTTAAAGCTGGAAATTCTGAATATTGAAAAAATCTGGTTTCTCTGCCTAAAAGAGATGTTAAAACAGCAGCAGAGATTCACAACAAAAGGATTAGCGTATATTGCCATAGACCGGACAAGTTGGGGAGCAATAAATATCTTGATGGTGAGTCTAATTTATGACAAGAGAGCCATCCCAATCTATTGGGAGATATTAGATAAAAAAGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 5 3613495-3611590 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012375.1 Microcystis aeruginosa NIES-2481 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3613494 37 100.0 34 ..................................... TTTTTTGGAGTAGGATATTAGTAAAAGTGATCTC 3613423 37 100.0 34 ..................................... AACCTTCGCGCCGATCCAGAAAAAACCGTAATTT 3613352 37 100.0 35 ..................................... TAGGCATTGATTAATAAAATCGTATAAAAGTGAGG 3613280 37 100.0 35 ..................................... ACAATTTTAGGGCGCGGCCTAATTGCCAGAAGACT 3613208 37 100.0 35 ..................................... TCTCATCGCCGGTTCCCGGACGGCAGCCGTCAACG 3613136 37 100.0 34 ..................................... GCTAATGGACTGCTTTCTCAGTGGGGAAATTTCC 3613065 37 100.0 36 ..................................... AATGACTAACCCCGACAAGGGTGACTCGCTATTAAG 3612992 37 100.0 35 ..................................... AGACAAGTACGCTGCCAAGCTTAAAGCAAGGAAGG 3612920 37 100.0 36 ..................................... CTAAACAGTATTCTAGACACCCTAAAAAACCATCTA 3612847 37 100.0 35 ..................................... GAGTTTACCAGTTAGCAGGGTTGAGCCTTGACGGC 3612775 37 100.0 35 ..................................... AATCCCTCAAGGGATTGCAGTAAATCATCTAATGC 3612703 37 100.0 35 ..................................... ATTTACATCCCGGTCTGCCATGACGGCCTTAAGTC 3612631 37 100.0 36 ..................................... TTGGCTTTTTGCCAAGTCCCCAAAAGCTTGTCTTTT 3612558 37 100.0 36 ..................................... ATTCCCTCACCCGGTACGGTTCCGATCGCGTCCGTT 3612485 37 100.0 35 ..................................... AAAACCTAGATTATTTAGTATCCTCAGACAAGAAG 3612413 37 100.0 36 ..................................... TTGTAACTGCTCTAATAGCTTATCGGAATCAAATAA 3612340 37 100.0 34 ..................................... TCAGGCTTGTGAGCCGGGTACTGAAAGAAAGCTT 3612269 37 100.0 34 ..................................... AAATCCGCAAAAGTTGCGAATTTGCCTTTCGGCA 3612198 37 100.0 34 ..................................... AGGTTTGAGTCTGATAAAATTAATCTTCGGTTTC 3612127 37 100.0 35 ..................................... CTATTAAATCCTGAGTTATTGAGATCAAAAGCGCA 3612055 37 100.0 33 ..................................... CATCACCAGCTTGATTAGCCAATTCCACTAAAT 3611985 37 100.0 35 ..................................... AAGAAAGAAGATGATCGCTCGATCAGATCGATCTT 3611913 37 100.0 35 ..................................... AATACCGTTGAGATTGCTGATAAGGTTGAGTCTGT 3611841 37 100.0 36 ..................................... CAGTTTTCTCTATACTATCCCCACAGACTAACCCAT 3611768 37 100.0 34 ..................................... ATTTCTACATCTCCCCCCAAAGACTTTAGCGAGT 3611697 37 100.0 34 ..................................... GATTACGCCATAAGCAGCCCTCCTAGACGCTCTA 3611626 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 27 37 100.0 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TTTGTTATCAGTTACGACATTTCCGATGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCTAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGTGCCTGTTGTCGGGGTAAAGTTGAACGCATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCTTCTGGGTAGCTGTAAAAATTCTTAACTATTATGTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGAACTGGGTCACTTGCTGTATGATTGGTTTATTGCAGGTGCGGCGCATACGAACCTTGAAAATCCCATAGCGTATGGCTTTTACCACTGGGCG # Right flank : TTCTATTGCTGGTAATTAGGGTTTGCTGAAAAAGTCATTGAAAAGTACAGGTCTCTTAATCAATGATTTCACTTAGCTACAAGCATAAGCTTTAGTTGTTGATTAATTTTTAAGTTATAACTTATCCTAATCATTGACCGAGAAAAAGTGCTGTTTTTCCATTTCAGACATAAAAAAGCCCAAAAAACCTGCCTCAACAGGTTAGAAAGATTCATGACTAAAAAAGTAATAGCAATCGCTGAAAAGGAAGTATGAGGAAGTTTAGCCATCACTTTACCTAAGCTAAATCTTCTTTTCCCCTGTCCAAATTTGCCCTCTATACAATTCCGAATCCTCTCATCATCGGTAGCTTGTTTCTTTTGTTCTTTACTAACATTTTTGGCTGGTCTTCCTAATGGGGGACCACTGATTCTGATTCCCCTTTCTTTACACCAAGCTCGGTTTTCTCTGGTTCGATAAATTTTGTCCACATGAACTGATTCTGGATAGTATCCTGTATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //