Array 1 91608-93676 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKXO01000001.1 Acinetobacter bereziniae strain TUM15538 sequence001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91608 28 100.0 32 ............................ CAATTCGTGTAAAAATGTTGGTACTGTACTTT 91668 28 100.0 32 ............................ ACTGGAGAGTTGGTTGCTGTTTCAGTTGTAGT 91728 28 100.0 32 ............................ TGAATGCGAGTTTGCCAGCATTCATCGTTATT 91788 28 100.0 32 ............................ TTGACCTTTAGTAACTAGTATTAAATCTAAGT 91848 28 100.0 32 ............................ AGTTCTGCACTTGCAACAATTAAAAAGCAGTA 91908 28 100.0 32 ............................ TGGAAGTATTTCTTGCTTAATTTCTAGTTGAC 91968 28 100.0 32 ............................ TCATTGCTGTCATTAAGACGTGATCTAACCGC 92028 28 100.0 32 ............................ ATTGAACAGCCACGACCAGATAGCATGATTAA 92088 28 100.0 32 ............................ TGAGATTATACGAAAAAGGTAGGGCAGAGGGA 92148 28 100.0 32 ............................ TCATTGCTGTCATTAAGACGTGATCTAACCGC 92208 28 100.0 32 ............................ ACGACCAGATAGCATGATTAAATATGTATTTC 92268 28 100.0 32 ............................ AAGATAAATGCTCTACAGTCACCCCTGAAAGC 92328 28 100.0 32 ............................ GTGTCGATATTGCTTTTGATGACTTTGAAAGC 92388 28 100.0 32 ............................ AGCCGATCTTAGTAATGATGGTGGTATGTTGG 92448 28 100.0 32 ............................ CAAGACTTCCTGTCTGTATCTTATTACTTCAT 92508 28 100.0 32 ............................ GCCAGCATAATGGATACCAAACTTAGACTTTA 92568 28 100.0 32 ............................ AGTCAAGACCGACAATATTATTTTCGATTGGA 92628 28 100.0 32 ............................ AAGTGGGGGTGGCGGTTGGACAAATAAAACAG 92688 28 100.0 32 ............................ CATTCCCATTCCTCAACCCGATTAATAGAAAT 92748 28 100.0 32 ............................ TTGAGGGGTCAATCTATGAAATTAACAGATGA 92808 28 100.0 32 ............................ TATGAACCTTACGTTCAGATTAAGGCAAGTCC 92868 28 100.0 32 ............................ TGACGGAGATGGTCAAAAATATCCTGCTCCAG 92928 28 96.4 32 .........A.................. GCATAACTCTATATTATGTTACTTGAATTACC 92988 28 100.0 32 ............................ GCTGAGTGGGTTCGCGAAAGATAATACCGACC 93048 28 100.0 32 ............................ AAGTTTTTTTGGAGAGAATAACATAAAACTAT 93108 28 100.0 32 ............................ GCAGAAGCAGGAACTGTAAACAATGTTTTTGA 93168 28 100.0 32 ............................ AACATAAGAGTGCCCACGCACCGCATGGGCGA 93228 28 100.0 33 ............................ CAGTGGCTCAGGCACAATCAAAATGATTTATCT 93289 28 100.0 32 ............................ TGTACCAAAAGCATTGGAACTTTTAACATTCT 93349 28 100.0 32 ............................ TACAGCAACAACAGCAGTGACCTTTGGCGTAG 93409 28 100.0 32 ............................ AGGAATATATTTCAAAGCCTTCAACATTTTTT 93469 28 100.0 32 ............................ TTATGCTATTCAACAGCAAGGCAATAGTTTTA 93529 28 96.4 32 ...........C................ AATTAGGTGCATCACCACCAGTCGACGCAGTA 93589 28 96.4 32 ...........C................ TACCAATATTTGGGATGATGGTACATTTACTT 93649 28 92.9 0 ...........C.........C...... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.5 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : TTTCCAGAAACAGACTTGGAATCATACATAATTCAAAATTTTATTCTTATAAAAACAATAAGCACTATTTTTGATGAAATTTACGTTATAGCACAAGTTTTATTGAACTTTAACATCATATAAAAATAATCTTTTTTAGCAGTTTATTAAGTTGCAAAGGAAGTATGTATTATCGTTTGCAAGATAAATTAAATTTTAAATATTTGATTGATAAATAAATTATTTTATATGAGGTATGTCGTATGATTCTAAGGAGTGAATCTATTAGAGTTTGTATTATATACTGCTATAACTTGTTGCTGATGAGGCAAAAGGGAACAATTTAGGGAAATATGCTTTTAATAGAATTACGATTATTCAAATATTTTAACCCAATATTTTTTTACTCTTTAACAACTGAATAAAATCAATAAGTTATATTGGTAAGTAAAAACTTGGATCATTTGATGATTTTAGGTTTAACTTACTGTTATCACTTTATTTTTTGATCTAAAATTATA # Right flank : AAATTGTTAAACCTCTCTGATGATTTTAAAAATTTATAGTTGTCTAAATTGTTTATTTTATAGCAATAAAAAAAAGCCCACTTGAATGAAGTGGGCTTTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATTGGAGAATCTGCATGCGATTATAAGGATATATCTTGAGTGGTCAAGCCTTTGATGTCATCTTTTCTTCATTTTTAACTTGTATGCTTTTTATTTAAACAAATTAGATCAAAATTAAAAAAATGGATTTGAGTGGTTGCAAAGCGAGAGCTGACTTGTTAGATTAAAAACATAAAGAGCGTTTAAGTCTAACTTAAACCGTGTGGATTTAACCAACTTGCCAGCACTAAAATGGCTAAATAGGAGACAGCGTAATGACGACGCTTACTATTTCTCAAATTTTTGAAAAATTTTCTTTTTATCAAGAAAACTACCTTTCTATCCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9096-12485 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKXO01000021.1 Acinetobacter bereziniae strain TUM15538 sequence021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9096 28 100.0 32 ............................ AAGTCATCAAATGTTATTCCATTTATGAAGCT 9156 28 100.0 32 ............................ TTGCATTTGTAGAAATGCACGAAGTAGGAATT 9216 28 100.0 32 ............................ ATTGTCTATAATCCATCCTGCTGCATAAACGA 9276 28 100.0 32 ............................ CAACCAGAAAAGGGCATTTTTTATTTGCGAAA 9336 28 100.0 32 ............................ AACTGGACAAGTCCGTTATACAAAAGCTCGTA 9396 28 100.0 32 ............................ TGGCAAGACAATAATGATATAAAACAGAGATT 9456 28 100.0 32 ............................ ACGTACAGGAAAATCACTAAAATCAGTTGAAT 9516 28 100.0 32 ............................ TACACAACAACAGCCAACAATAGCCAATAACG 9576 28 100.0 33 ............................ AGTACCATTTTTTAAATCAACTTCTTTGTTTTT 9637 28 100.0 32 ............................ GAAAAGGAATTAACGTTGATAAGCCTGAATGT 9697 28 100.0 32 ............................ AAATGTAGAACATAAAGGAAATTGGAAACGTC 9757 28 100.0 33 ............................ AATTTCAAATGAACTTTGGTACATATTCTTTTT 9818 28 100.0 32 ............................ ATTGAACAGCCACGACCAGATAGCATGATTAA 9878 28 100.0 32 ............................ CCTACATTAGTAAATAAAGATGTGCGTGATTT 9938 28 100.0 32 ............................ ATACCAAGATAGTTTTTTTCCGCCATCATATT 9998 28 100.0 32 ............................ TTTAATCCTTAGCTATAAAAAAGGTGGGGTGC 10058 28 100.0 32 ............................ TTTGAAAAAACCACTCCAGTATATCTGCCTAC 10118 28 100.0 32 ............................ GATTCATGGGATGATTGCGAAACTGACAGCCT 10178 28 100.0 32 ............................ GCCAATAAGTACAAGCAACTTACCCATTTCTA 10238 28 100.0 32 ............................ ATTTTCTATCATATTCCTACAGTCTGATTGTG 10298 28 100.0 32 ............................ ATCGTCAGATTTCCAGTCCGTTGCTTTTGCAC 10358 28 100.0 32 ............................ TGTTAAGGATACAGAACTTGCGCATATTGTTT 10418 28 100.0 32 ............................ TGTCAAAGATAATTTTTGAGACTGTTTCGAAA 10478 28 100.0 32 ............................ TACTGCATTGCCTTGAGACGTATCCATGGGAA 10538 28 100.0 32 ............................ ATTTGAGGTGACTTTAGAGCTTGATATGGTCT 10598 28 100.0 32 ............................ ATTTCTGAAAAGATATGACCGTCCCGTTCTTC 10658 28 100.0 32 ............................ ATTGGCAGATAAGGACGTGCGGGAATCTTGAC 10718 28 100.0 32 ............................ CTCAAATTTTACCAGAAGTCTATAATCCAAAT 10778 28 100.0 32 ............................ ATTCAGGAAAGACAATGGAAATATTAATTTTA 10838 28 100.0 32 ............................ AGTTCGTACAATCTATACCAACATTAAAGCGT 10898 28 100.0 32 ............................ TATTACTGTAGTCGTCGCTACATGGGTTGTTA 10958 28 100.0 32 ............................ AGCAATTGAACTTTGTAGAGATTTAGTGAATA 11018 28 100.0 32 ............................ ATAACACCAGAAATACCAGCAACACTTCTAAG 11078 28 100.0 32 ............................ GCAAGTGGTAAAGAATTTTAACCCACAAAGTA 11138 28 100.0 32 ............................ TATTATCCGTGTGTGTGCGATTGTGACTGTTA 11198 28 100.0 32 ............................ TGGAATATTGATCAGATAGATGCTTATTCAGC 11258 28 100.0 32 ............................ TTGTAGCGTAGGAATTGTGTTGTTAATCATGT 11318 28 100.0 32 ............................ GCCGTACTAGACAGTGTATCCGCACTTGTCTT 11378 28 100.0 32 ............................ ATTATTTCCTCATCGTCATTGCATGAATATAA 11438 28 100.0 32 ............................ TACACGTTGATAAACATATTCAGAAGACGGAT 11498 28 100.0 32 ............................ AAGCATTTAATTCAAAATCAAATTCTAAGACA 11558 28 100.0 32 ............................ ACCTCGATAAGTTGTACCGATTGGCATGGTTG 11618 28 89.3 32 .......A..G......T.......... AAGACGATTAGATAGCTCACTAATCAAGCTTC 11678 28 89.3 32 .......A..G......T.......... AGTGCATTTAACATCAATCTACATTATGTGAA 11738 28 89.3 32 .......A..G......T.......... ACCACGAGCTAAAGTAAGAGTTCTCAAATTAC 11798 28 89.3 32 .......A..G......T.......... CTCACAAGACTGGTGGCAAGTTCAGGGCAATT 11858 28 89.3 32 .......A..G......T.......... AGTTTGCAACCATCTCAGCATTTCTGCGATTC 11918 28 89.3 32 .......A..G......T.......... ATATCGGGAACGTACCTGAATTTGAGCTTGAA 11978 28 89.3 32 .......A..G......T.......... AACTCCCCAAACTTCGCTAACATCAATATTTT 12038 28 89.3 32 .......A..G......T.......... AAAATGTGCCCCAACTGTTGTAGCATTAAAAT 12098 28 85.7 32 .....T.A..G......T.......... TAAAGGGTGGAAAACACAATCTAAGCCAAAAG 12158 28 85.7 32 .....T.A..G......T.......... ATTGTGTACATGTGTTTGTCGCTTGATCGACA 12218 28 85.7 32 .....T.A..G......T.......... TCAAACAGACGATATAGTAAACAATTTTCCGA 12278 28 85.7 32 .....T.A..G......T.......... AATACAATTGGATTTTAGAGCCTAAATCAAAA 12338 28 89.3 32 .......A..G......T.......... AATACAATTGGATTTTAGAGCCTAAATCAAAA 12398 28 89.3 32 .......A..G......T.......... TTGCTAACGTTTTGAATTGCCGAAAAGTCTGA 12458 28 67.9 0 .......A..GT...AATCC....A... | ========== ====== ====== ====== ============================ ================================= ================== 57 28 96.6 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : TTGAATATAAGAAAATGGTTAGATCGGTTTCCTGATTATGTGCATATCACAGGTGTACGTCCTGTTCCTGAAAAAGTAACGGCTTACGCAGTTTATAAACGTAAGCAAGTTAAAACCAACGCTGAACGTTTGGCTCGCCATCGAGTCAAAAGAGGAGATATTGGCTTTGATGAAGCATTGAGCCGTTATCTTCAAGTGGTGACAACAACTGATTTACCTTATGTCCAAATGCTAAGTTTAAGTACATCGGATGAACAAGATAAAAAGCGTTTTAAGCTATTTATAGAAAAGCAGATCACTGAAAAATCTGAAACTCAGGTTTTTAGTACATATGGGTTAAGTTCTGTGTCTACAGTACCCGAGTTTTAACCCAATATTTTTTCACTCTTTAACAGTCTAATTAAATCAATAAGTTATGGTGGTGGGTTGAAACTTTGGTCTTTTGTAGATTTTTAGTCTTAACTCACTGTTATAACTTTATTTTTTGTTTTAAAATTACT # Right flank : ATATAAACGCCTTAACATCTTCGCTAAATTTAGGAAAGTACAAACGATATGGAATAATTTTTATAGTAAATAAAAGATGATAATTTAAATGATAATTATTTGCATTATTAATTGCATTTGAATATTTGGTAAAATACAATGTGCAACAATTCTTACACAATCCCTCCGTAATTTGAGTTGCGTATTAACATGAATAAACAATTAACACTTCAAGCACTATCTCTCTCCATACTCTCAGCAATGTCAATTTCAACATATGCAAACGAGACTTCAGAAGACTCTTCCAAGCTTAAAACGATCGTCGTTACAGCAAGTAGTCAGGCGGTCGATGTTAAAGAAGCACCAGCCAGTATTAGTGTGATTACCAGTGAAGATATAGAAAAACAACCGGTGGGTAGTCTTGGCGAGTTATTAAGTAAAGTACCTGGGGTTACTGGTGGAATTAGTCCTAGCAAAGAAGGCTCTAAAATTAAACTACGCGGTTTACCTGACAATTACAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9880-8291 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKXO01000006.1 Acinetobacter bereziniae strain TUM15538 sequence006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9879 28 100.0 32 ............................ TTTACCTGCTGATTGCGATTGGCGAACAACCC 9819 28 100.0 32 ............................ AGATCAGGGAATTAGACATAGACAACTACGAT 9759 28 100.0 32 ............................ AACAACAAAGCTAATCAACTTCATATTAATAT 9699 28 100.0 32 ............................ ATCACGACGAGTTGAAAAGTGTTTAGAATACT 9639 28 100.0 32 ............................ AAAGTTGATGGTTGTATCTATGTTTTGGTTTT 9579 28 100.0 32 ............................ GTTCGAATCGAGCTTCTACTCAGTAGATGCTG 9519 28 100.0 32 ............................ TTGGGAACACGGCACCATTTTTTCTAGACCAC 9459 28 100.0 32 ............................ CAGTCAAAGAAATCTTGAACTTTTTCCCAGAA 9399 28 100.0 33 ............................ AATAAGAAATCAGAAGATGAAATTATTTTATCT 9338 28 100.0 32 ............................ CACCACTTTTGCCGATGATGCCGAAAATTTTG 9278 28 100.0 32 ............................ ATATGTTGAATTAAAAGCTAGTCCTGCAAAAA 9218 28 100.0 32 ............................ TAAATTTGCAGGCTGTATTAAATATAATGGTA 9158 28 100.0 32 ............................ AGAAACGCAAATTTCATTTGGTTGGATGTGAG 9098 28 100.0 32 ............................ ATATGATGCCCAATTTCAATATTGCTATATTG 9038 28 100.0 32 ............................ AGTGGTGGTACAGTTTTTGCAAAGGATAATAT 8978 28 100.0 32 ............................ AAAACCGAACGATTTATCCTCTATAATCATCC 8918 28 100.0 32 ............................ TTCAATTTTTAAAAGGAAATACAAATGTTATC 8858 28 100.0 32 ............................ AAAGCAATGAACGCTATGAAATTTTACTCATT 8798 28 100.0 32 ............................ TCCATAATCCATCCAACACCCTCCAAAAGTCC 8738 28 100.0 32 ............................ AACATCAACATGTACCACAACTGAGATGGTAT 8678 28 100.0 32 ............................ AAATAACTCAACCGATCATCAATTATAGAAAG 8618 28 100.0 32 ............................ TTGCTGTGTATATGCGTAGTACTTGCCGTTAA 8558 28 100.0 32 ............................ GCACGCCCGCAGGTAACGTGTTTCCGCTTGCT 8498 28 100.0 32 ............................ AATTGGTCCACAACATCAGGATCAGTGTCATA 8438 28 100.0 32 ............................ TGCAGAAGGTATTGAGCAATTCACTGAATTAT 8378 28 92.9 32 ...C......A................. ATTCACGGCATCGGTTGAAGTTTCAGATACAT 8318 28 92.9 0 ...C.T...................... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.5 32 GTTTACTACCGTATAGGTAGCTTAGAAA # Left flank : GCTTTAAATGATGCCAAATTTAGTAAACGGATCTCAGATAGACAATTTAATTTAATTCAAACAATTATGTTTGTAACAGGACAGACAAAAAAGTTTTTAAACCAAGCTGAGTTATATCGAATACCACAAATCCAAGTTTTATATACAGGTAAAACAGAACGTACTTTTTATCGTGATATTGCTAGATTGGTTGAGCTAAACTTTTTAGATGATCAAGATGGATTGATTGTTGTTGGCGAGTCAGTTTAAATATGATGAGTTTATAAATTGCTTGGCAATATTTTATAAATCTTTTGCAACTGAGGCAAAAGTAGGAAAATTTGGATTGTATAGATTTTAGTGAAACAGAAGATAATTCTAAAATTTTACCCCAATATTTTTTAACTCTTTAACAACTGAATAAAATCAATAAATTATAATCGTAAATAGAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTATTTTTTGTTTTAAAGTTATA # Right flank : GAGATTTCTTCATTCGTAATTTGAATTGTTCAAAATTTGATTTATATTCATTTCTGTTTTATTATTTGCTTGGAGACGCCGAGTAGCGGTAACTACCCGACGCATTCTGTTAGTGAGCTGATTGAGAAATCAACAACAATAACAGGATGACAACGATGATTAGGTAAAAGCGCATCGTAAACCTCCAAGGATTAATGTAACGAAACACCGTTACAGGTCACCCTAGCCCCAATGACTAGGGCAGGTTACTGTAACACAACAAAAAGCGCCCATGGGCGCTTTTTGTTGTTTAAAGAGATGAGGTTAACTACATCCTATCCAGCGTTTGTCTTCTTCAATTACCATATTCACTTTTTTCACTTTCAATTCAGCACGATCATTTATTTTATCTGTTTTGTACACTGAGAGACTTCAAGAGAACACCTTCCGTATAACTTGATCATTCTCTAACAAGCATTCACTACCATATAGGTAGCTTAGAAACCTTACCAAAGCGATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTTACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13112-11522 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKXO01000006.1 Acinetobacter bereziniae strain TUM15538 sequence006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13111 28 96.4 32 ...........C................ ATATGATTCGCAATCTTGGCTTCTGTTTTACT 13051 28 100.0 32 ............................ ATTTAGAATAGGGATTTGCATATTTACCCCAC 12991 28 100.0 32 ............................ TTATTGGTTGACTTGTCAGCGAAGATTGCACC 12931 28 96.4 32 ...........C................ GAAATTATTTAAGTTGAGGGTAATCCTGTAAA 12871 28 92.9 32 ...........C.C.............. ATAAAAAACTATCTGTCAAAGAAACGCCTGAT 12811 28 96.4 32 ...........C................ AAAGCCGATCAAAGCTATGTAAAAGAGCAAAT 12751 28 100.0 32 ............................ TTTATCGACACCATCCTTTATGCCATCCAATT 12691 28 100.0 32 ............................ TTTAGGCTTTTTTTAGAATTAGGGAAATTAAG 12631 28 100.0 32 ............................ AAACATTTTTGGTAAAAACTAAGCTGTGATAA 12571 28 100.0 32 ............................ TAACATCAAACTAAAACCAATTTCAGAAGAGA 12511 28 100.0 32 ............................ TGATTTCCACTTAGATGTCTGTGACTTCTTGG 12451 28 100.0 32 ............................ AATAAAGTTTTTATCAGCATCAAAGTAAACAC 12391 28 100.0 32 ............................ AAACATTAATTTCATTGAATCAGATGTTGTAT 12331 28 100.0 32 ............................ ACACTTACAAACTAAGTCAATAAATGGTGCGA 12271 28 100.0 32 ............................ TTACATTGGTAATAATGGACACAGTAAAAAGC 12211 28 100.0 32 ............................ GAATGCACTTGTAAATAAGGTTAATTGTGAGA 12151 28 100.0 32 ............................ AATGTGTTGCGAACGGATCGACAGTAGGTACA 12091 28 100.0 32 ............................ TAAAGGATTTAAAAGACGCTTATCATCTTTAA 12031 28 100.0 32 ............................ AATAACGAGCTTGTATCACCCGAACGGATTTT 11971 28 100.0 32 ............................ TTACAGAAAATAAAGACAACCGCTATACAGAC 11911 28 100.0 32 ............................ AGTAACAGTTATCGCGCTTACATGGCTTTTGA 11851 28 100.0 32 ............................ TTGTATTTTATTAGAATATGCCGTGATTTGAT 11791 28 96.4 32 ..................G......... ATTGAGCCATTTTTGACAGTCTGATTGCTTAA 11731 28 100.0 32 ............................ ATTTCGATCCACATAAACATCATTTCCAAGTT 11671 28 96.4 32 ....G....................... AGTTCGCGCCTACGGACGCTCTGTTTGTACAG 11611 28 100.0 32 ............................ TGGTAATGCAACAGCACAAGATGATTGGAGAA 11551 28 89.3 0 .........T.........A.......C | CA [11525] ========== ====== ====== ====== ============================ ================================ ================== 27 28 98.7 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : GAGTCTGGATATACCTACCAAGATTTTTAAAGGGTTTACGAGTATTTTCAAAGACTTGTAAGCCTTTTTTTTATGGTTAGAATTTTGTTGTTTTGACTAGATTTATCAAAAAATCATAGAAATAATTACTAGACTTCACCAAGAATGCACCAAGATGAGGATGAATGAAGTTACCAAAACCGATTAAACGTGGTGAAGTTTGTTTTACTAAGAAAATAACGAAATATAAGATTTCTTCATTCTCTAATGATAAAGTAAATGAATGACATTAAAAAATATGTGTGAATATTGGAAAATCTTTTACTGATAAGATAAAAGTAGTTGATTTTGAATATAGGCTTAGTTAATCAAACAAATATTCTAAAAATTTACCCCAATATTTTTTAGTTCTTTAACAACTTAATAAAATCAATAAGTTATAATTGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTTTTTGTTTTAAAATTACA # Right flank : TTAAAATTAATTGGATATAGGCTTAGTGTGACTGGAAAAGTCTAATCAATTGAAAAATTTCAATATTATGTTTAAAACAAAATTTGACAAAATGAGTGACATAATCTTTGACATTATTACAATTAAAATTTGACTAAATTTATGATTTATAATAATAATGTTTTGACATTTTATTTGACAAAAAAATTGACAAAATGCCTGATCAAAGTAAAGTTTGGCTAGATGACACAACTTTAAGAGTCATGACGTACAAGTCCGGCTCTTTTACCTTTCAGCTTGGGTTTGACTTAGAGCAGGTTACACCTATGCTTGATCGTGTAAACGATGCACAGAATAGATTTAATAAAATGCCAAGTTTGCCTCAAATTATAGATCAAGTACAAGAAAAGGTTTTAGCGAGTAGTATTTATAGTACAAATACCATTGAAGGTGGTCAATTTACAGAGCAAGAGACGAAGGAAATTTTAAGGCTAGATCCTAAGACAATACAAAAGACCGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //