Array 1 21-920 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYZ01000036.1 Nocardia arizonensis strain W9405 9405_27_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 21 30 100.0 35 .............................. CCGTTACTCACTGCGGCGAGGATCGAGTCCGATGT 86 30 100.0 38 .............................. CCGACGCCGTAGCCGAGACCGAACGTCTGACCGCCGGC 154 30 100.0 38 .............................. GACCATCAACCCCGACTCCTGTCGGCGCGCCGGACGCG 222 30 100.0 36 .............................. ATGAACCCGACGCCCGCCTCGTCCACCGTGATCGCG 288 30 100.0 35 .............................. AGATCGCGCGGCGCGGGATCGGTCGGCGGCTCAAG 353 30 100.0 36 .............................. ATGAACCCGACGCCCGCCTCGTCCACCGTGATCGCG 419 30 100.0 37 .............................. TCGTCGAGGACGGACGCGACTTCGGGCACGGTGATAC 486 30 100.0 37 .............................. AGATTGATGTCCACCACGGCCTCCGGGGGAGCAACTT 553 30 100.0 38 .............................. ACAAATATCCGCCCGGGTGGCATCCCAATGATCGTGGA 621 30 96.7 39 ......G....................... CCGCTCGGCGTGGGTACTGACCACGACAGGGCGCGCCGT 690 30 100.0 37 .............................. CTCACAGGCGTACCCCGGCGATGCGGGCGAGCCCACG 757 30 100.0 33 .............................. TAGCAGAACGTCGCACCGGAACCGAGGTGTCGC 820 30 100.0 38 .............................. GCGGTGGCGAGGGTGAGTTCGACTGGATCCGGGACCGC TG [834] 890 30 93.3 0 A............................A | C [899] ========== ====== ====== ====== ============================== ======================================= ================== 14 30 99.3 37 GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Left flank : GACTTCGGGCACGGTGATACG # Right flank : ACCCACACAAGCCATAGAAACCCTTCTCCGTGCCCCCGCGGTGCCCGGGCGCTACCAAGAACCCCGCTAGGCGGCTGTATAATTAGGTGTCCAGCGCCGCGCCAGGAATTGTTACGGGTTGGAACGCTGGCTGTTGCGCGAACAACAGCCAGCTTCTCGTTGTGCGCTATCGAGAGTGCAGGAACACGACGAGAAGTGCCAGCACACATGCTGGGCACCCAAGTGTAATCTCGGCGGCGATTCGGCCGGTCGCCGAGCTTCTCCTATTACGTTGCTTCCCCATTCCTTCCTTTCATACGAGGAGCGACGCGAGAACCTTGCGCTTCTCGCGCCTGACGTCGCTGAACTCCTGATCGCATCTCGACCCTTTTCCTTTGGGCGGCAGAAGGGAACAAGGATGCCTTCGATCAGGCTCGTGCACCGTTTCCAGCGCTTCGGTGCACGTTCCCTCCGAGGGGCGATGATGTCTTCCGGCATGAGGGCGCCATACCTTCACGCAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 11666-9819 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYZ01000036.1 Nocardia arizonensis strain W9405 9405_27_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 11665 30 100.0 36 .............................. TCCACTCGATGTTGAGGTCGCCGTGCACGTACCCCT 11599 30 100.0 36 .............................. TTCGGCGGGGTCGTCTGTGGCGATCCGGCATTACAT 11533 30 100.0 40 .............................. GCGGCAACCGATTGCGGATCGCGCGCATCGACCACGACGA 11463 30 100.0 38 .............................. CAGACCGACCGACCAGAATCCAGGAGCGACCAGATGCC 11395 30 100.0 39 .............................. ACAAGCCCGGCAGAGGGCGTTTCCCCAGACCAGACGGCA 11326 30 100.0 37 .............................. GGGATGCCGGACGATTGCGTATCTGCGTCTTCACCCC 11259 30 100.0 42 .............................. GTGCTTGCCCCCTGCCGCTGCACTCGTATACCGGGAGTAGAC 11187 30 100.0 39 .............................. ACCTCCCGCCACTCGGTGACGTAGCGGCGCATCAACCGA 11118 30 100.0 37 .............................. CCGACCTCCCCGCCACCGCCCACACGCCCGCCTCGGA 11051 30 100.0 37 .............................. CCGGGGGGGTGGAGACTGCCCGGTATCGGTGCTGCAT 10984 30 100.0 35 .............................. AGGACCGGACCCATGTTCGTGCAAACCAAATCCCC 10919 30 100.0 37 .............................. CCGCCGCCGTCATCCAGGGTGCTGCGGTGCTCAAACT 10852 30 100.0 35 .............................. GGACAGGCCGATCCATCCGAGGACACCGGCGTAGC 10787 30 100.0 38 .............................. ACTGGTTGCAGACGAGTCGATCGGCGCGCCCGCGTTCG 10719 30 100.0 37 .............................. TCATGAAGCACCTGCGGGAGTAGCTGGCCCAACTCGT 10652 30 100.0 35 .............................. CACGGCGCGATCTCTGGCGAACTACCTCCAGAACC 10587 30 100.0 38 .............................. GTACTTGCTGGCACTGCCGCGCTCGGTGTCGATGACGC 10519 30 100.0 38 .............................. CGGGTGCGCTCATGCCGCACCGTCCTCGGTCAGGACCT 10451 30 100.0 36 .............................. CTTCCTCGGACATCCGGTAGGCACGAGCCACCCCGG 10385 30 96.7 36 .........T.................... GCGGGACCGGGAACCCCTCGTCGTCCACGACGAACT 10319 30 100.0 38 .............................. GGGTGCCCGGTGAACTTCGCCGAGTCCCGCGTCATGGC 10251 30 100.0 35 .............................. CTGGCCGAGTGGCGGCGCGGCCAGCTGCGCGACGC 10186 30 100.0 36 .............................. TTCATTGTCTCGCAACCTATCTCGTCTCGCCTCCCT 10120 30 100.0 39 .............................. CGGGGGCTATCGGCGGTACCGGAGTGGTCATCTTCGGCT 10051 30 100.0 37 .............................. TCGCCACGGTGCGGTTCGCGATCGAACGGTGCTTCGC 9984 30 100.0 38 .............................. GTCCTCGCCGAACTGGACGGCCGCGCCGACCGCGACCG 9916 30 100.0 38 .............................. GAGACCGTGAATTCTCTGGTGGTGTGGTCGCGCCAGAT 9848 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 28 30 99.9 37 GTTGCCAACCCTCGCAGGGGCGATGAGGAC # Left flank : GGCCAGCCCACCCTGCGCCAACGCCTCCGCCTGGGAATCCTGGCCGCGCTCGACCAGCGCATCTCCATGCGCTACACCCTCACCGGCATGGCACCCGAGGACACCGCCGACTACATCCGCCACCACTGCCGCATAGCCGGCCGCCAAGACACCCTGTTCAGCGACGACGCAATCGGGTTGATCCACAACGCATCCCGCGGACACCCCCGCGCGGTCAACAACCTCGCCGTCCACGCTCTCACCGCCGCGTTCGCCGCCGGCAACGCCATCGTCGACGAGAAATCCGCCCGCATCGCCATCACCGAAACCGGCAACGACTGACCCACACCACCACCAGGTCGACGACCCACACCGTCACCACACCGACCACGGCCTCGCTCACCCAGCCGAGCGAGGCCGTTCCCATCCCCTCATCATCGGCACCACCAATGACGCCAACATCGGCAAACTCAGCGGCGGCCAACAGTCGAGCACGTACGCGCCTTTCTGGCCGATCCTGT # Right flank : CCCACAGTAAAGCTGCTGGTTGCAGCATCGCGGGATGGGTATTTTGGTTGTATTTTGCAGCAGACTGTCGGTAGTGCAGTGGTGTTCGGCGTGTCGCTGCAATGATCTTGCCGTCAGATGATGGTGGATGGGGCGGATTGGGTTGTTCCCCAGGATTCGCGGCGGGGTGTTGTTCCGGGTGGGTAGGTGTAGACGAGGACACTGTCGTAGCTGGGGTCGATCGCGGTTTCGATGGCGGTTCGGAAGCGTCGGTATTGGGCAGGGCTGAGCGAACCTTCGAACACGCTGCGTTGGACGTGGTGCAAATATTGGCGGCAGGTTCTGAGTACCACGGGGTTTCGTTCGACTGCGGTGTCGTAGACGACGATGACGTACATGGTCCTACCACCAGATCCGGAATGGTGTGTAGGAAGTTTGTTCGAGTGAGGTGCGGGTGAGTTTGAGTGCTTCGAGGTAGAGCAGTTCTTCGTAGGCGACTTTGCGCTTGAGGCTGCGGTGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCAACCCTCGCAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 14983-15743 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYZ01000036.1 Nocardia arizonensis strain W9405 9405_27_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 14983 30 100.0 35 .............................. GTGGGCAGCATCAGTGGGGCACCGTTCATACCCGG 15048 30 100.0 38 .............................. AGGATCACCCCGGTCTACGCCGCCGATCGGCAGGCCCC 15116 30 100.0 41 .............................. CTGAAGTACCGCAGGTCTTGGAGGGACAGACGGTCGGGCAT 15187 30 100.0 35 .............................. CTGATGCCGGGCAGGATGTGGCCGGACAGCCACGG 15252 30 100.0 37 .............................. CGGCGTGGGGGCGCGGCGAGGACCCCCGACTACTGTT 15319 30 100.0 35 .............................. GCGTCCGGCAAGCCTCTGCAATTCGCGGCCGACGC 15384 30 100.0 35 .............................. GACGAGTAGCCCTGGACAGGTTCCCTGAGAGCCTT 15449 30 100.0 37 .............................. CCGTCCAGCAGTCGATGGCCTGGTCGGACTGGCGCAG 15516 30 100.0 36 .............................. TGGCTCGGTGAGGTGGATGACCGAGAGCTGCGTCAC 15582 30 100.0 37 .............................. GCGAAGCGAGTGTGCTTGCGGTAGTTGGCGGCCTCGT 15649 30 100.0 36 .............................. AGGTCGGACCGCTGAGCGGGTCGGCGGCTTCGGCCG 15715 29 93.3 0 ..........-..T................ | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 99.4 37 GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Left flank : GACCGCGATCCGGCGATGACCGAGCCCGCCCGCACGGGCGGCGAGCACGGCCCAGATCACCGCCGCCCCATATGCCCTGCGCAGCAGCAAAGTCACCGGCAACAACACATGCGTCACCCCACAGCCCCGGCAACGAGCGCGCCGAGGCCGCACCCGCTCACCGACCGGCCCGACCCGCCGCGGTCGTGCCCACCCCCACCGGGCCAACACCCCGACAACACATGCCGGGCACCGGATCTCACCCGCCACCAGCCGTGTCTCGACGCGAACCAGATCGACCTCTACCGTGACCACCAGTGCCTCCGAGCACTACGCACGGCACCCCGCCACAGGATCCGCCAAGACCAAGCCGGGGTGCCGTGCACCCTGCAATGCTCGTCACCCTGACGGTGGAGACCACCACGATCAACTCGAACCCGACGCCGAACATCACATCGGCAACACCAACGACGACTCAGCCCCCGTAATCGTCATCCCCAATGACGCTCAACACTCGACGC # Right flank : CCGGTCTGCCGACAGGAAGCTGCCAAGAAATACGCTGGGCACTGGCAGCGTCGTCCCTGCGCAACGTGCGCTCAACGGTCGGCGCTCCTCGAAACGCGGCTGAACTATCAGCTTGAGCCATGCTCGAACAGACGTCTTCGGCAGATGGGACCGCGCCCGTAACCGCGGTCTCCCGACCCCAGGTAATGACCGCCATTACGCGGCCGTGCCCTGGCGTAAGCCAACGGCGTGGTTGTTGGACGGTCTCAGTCGTCTCGGATGACCGGTCCGCGGAACCAGCAGTAGGGTAGACGGCTTTCGGGGTAATTGAGGTAGAGATTGTATGCGGCACGGGTGCGGTGCCCGATTCCGTCGGTCTTGCTGGGTTCGATCAAATATTCGACGGCGAGTGGGGTGACGGATGTGGCGGGCCAGGTGGTCAGTAGTTCGTCCTCGGTGTCGTAGATATCGATCCACGATGTCGTGCCGTCCGGCAGTGGAGAGTCGGTGATTTCGAATCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 741-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYZ01000095.1 Nocardia arizonensis strain W9405 9405_45_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 740 30 100.0 39 .............................. ATGAACCCTGACATGGCCGCTCTCATGTTCACGGCCCAG 671 30 100.0 38 .............................. ATTATCGGTCCGAGTTTCAACAACACACTCGGTGTGCG 603 30 100.0 38 .............................. ATGTCGTGCAAGTCGACGGCCACCTGTACTTCGGCGTG 535 30 100.0 38 .............................. TGGGCCGCCAGCAGCGTGCTGGTGACATCCTCACCCCG 467 30 100.0 38 .............................. TGGCGAGGAACTGAGCGAATCCAGATTTACGGGGAAAA 399 30 100.0 37 .............................. CGCTCGAGCGGTACCGCGACCTGTTCCCCGCGGTGGT 332 30 100.0 37 .............................. GCGCGGATGGCCTCGACCTGCCCACGCAGCTGCTCAC 265 30 100.0 35 .............................. ATGAACTGCTCTACGACGATCCGCCACGGGATCTG 200 30 100.0 38 .............................. GGCTACCGGGTCGAGCGCACCTACGTCCCCTATCCGGC 132 30 100.0 37 .............................. TGCTCTTTTGGGCGCTGCCGTTGATCGTGGTGCGCCC 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 38 GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Left flank : GTGCAATACGAGTCCGCACCACGACTAGGCTGGTCGGTACAACTCGACGTCAGGTGCGCCGTTCGAGGCGAACCAGTTCTGCAGTTCCGGTCCGTCCAGTAGGTGTGGCGAATCGACACCTATATCGACAGATCCTATGACCAGGCCACTGGAACCGGTGACATCAACGCCTGTCAGCCGCGCACGCGAGACGCGGCAAGAAGTGCCGATACTCGCCGGCATCTTTCAGGAGAGCGGGCGGACCTGGCTCGTCGACAGTCTTTCTACGACTTGAGTTAACAAACAACCGAAGGCAGATGCTGGCGGCGCGCTGCCGCCGTGAAACAAACCGAGTTGTACGCTTCAATCGAGCCCCCAACACTCAATGTCCGACGACCCAATGATCCCCTCGTAGACTTTGCAGCGACACGCCGAGAATGTGAACACTACCGGAGGTGCACTGCAAACTTGCCCACTTCACAGTCACGAACGTGCACTCTGAACAGGATCTTTACCGTGGG # Right flank : CAAACTCGACGGCAAGACCGACGCCACGGCGGGCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //