Array 1 28649-25720 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZAU01000093.1 Prevotella copri strain iK21316 NODE_13_length_74186_cov_78.4674_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 28648 33 97.0 33 ................................C TTGTATTTTTGCAAAGCAGTAGCAGAGCGCAAA 28582 33 97.0 34 ................................G CTGGATCTCTCTAATGACTTTGAGAGCAATCAAA 28515 33 97.0 33 ................................G CGATAAGCATCAATCCATGATTTGCCACTCGGT 28449 33 97.0 33 ................................C AGTAGCCTCCTCAGCCTCTTTCAGCTCCTCTAT 28383 33 97.0 32 ................................C AATGGTTCGAACTGGTGCGACTGGTTGATGGC 28318 33 100.0 33 ................................. GACTTATACATACCACTCAAAGAACGTATCAAA 28252 33 97.0 33 ................................C CGCTTTTGCCTACCCCAAACAAGAGAGTAGGAA 28186 33 100.0 32 ................................. TGCCAATCTCTAAGTTTTTTCGCTTCTGCAGC 28121 33 100.0 32 ................................. CAGTCTGTTTAAGCGTATATTTACCGTCAGCA 28056 33 97.0 33 ................................G TCTCATTAGTTTTGTCAGTATTATGTTTACCGA 27990 33 100.0 33 ................................. GCATACCTAGGAGAATATCCATAAGTAAGAGAC 27924 33 100.0 34 ................................. ATCAATACCAACACGAGAATAATCAAGCTGAGGG 27857 33 100.0 33 ................................. GCTCTTGCATAATCTTATAGTTCGTCTCATTAG 27791 33 100.0 32 ................................. TGTGGCATGATATTGTAAAGACTAAAAGCCTT 27726 33 97.0 33 ................................A TCATACGAAAAGGAGCACCGCCAATAGCGGCAG 27660 33 97.0 33 ................................A TATCCATATTTGAATTTGGCTGCAAATAATCAA 27594 33 97.0 33 ................................C TGAGCATAATTAAGAGCAGCCATAGCATAAGCA 27528 33 97.0 32 ................................C CAGATGCATTTGAATTATGCTCAAGCCAAAAA 27463 33 100.0 33 ................................. CAATCTGACGTTGAACATCAACGAGACCAGCCA 27397 33 97.0 33 ................................G ATTCCGATGAGTTGGCACAAGATTTGGAACGCT 27331 33 97.0 34 ................................A TAAAAAATCTTATCAGCAACAGCATCAACAGTCT 27264 33 100.0 32 ................................. TATTCCGCTTTGCATTTTTACGTTAATACTCT 27199 33 97.0 33 ................................A GCCTTAAATTGCTCTTGTAACAGTCTATTCTGA 27133 33 97.0 33 ................................A TCGCATTAGTTTTATCAGTATTATGTTTACCGA 27067 33 100.0 32 ................................. CCTAGATATGCGGAATTGAAAAGTGCTCGTGA 27002 33 100.0 32 ................................. TTAATCTCTCGCAAAGTTTGTGCATCAACACG 26937 33 100.0 33 ................................. CTTGAGACTTTTGAAGAGAAACAGAAGCATCAA 26871 33 100.0 32 ................................. GAAAGTTAGTGTTAACCTGTGGATTTATGCTA 26806 33 97.0 32 ................................A CAGAAGCATCAGTAGTAAGATTACCACTAAAA 26741 33 97.0 33 ................................A TATTATCACTAGGACCCAAATAATCAATGTTAC 26675 33 97.0 34 ................................A ACCAAGAAGCCAAATCAATGTATGAAATATAAGG 26608 33 100.0 33 ................................. TTGCGTTGATTACGAATCCTTGCGGCATACCTA 26542 33 100.0 32 ................................. TCTTGCTAGTCATAATTCTTAACAATTAAAAA 26477 33 100.0 33 ................................. TTGAACTTCTTTATCCATTCCTTTTGACTTCTA 26411 33 97.0 33 ................................C TTTCTACTTTCAGACCTTATACAACGTACAGCA 26345 33 100.0 33 ................................. CTAGCGTATCACGAACAAAAAGATGAAATGGAT 26279 33 97.0 34 ................................A GATAAGTATTGGTTTGATGTACGTTATCCTGGAA 26212 33 97.0 33 ................................A GTCTTTGAAAAGCTAGCGAGTGTTGGCAGAAAT 26146 33 97.0 33 ................................A GCCATTAACGGAAGAGAAGTAGACAATAATGAT 26080 33 100.0 33 ................................. TCCTCGCAAGCGATATAGATAATCTGCTTGAAA 26014 33 100.0 33 ................................. GAAATCGTTTGTTGAGACTAGAAAACAAAGAGG 25948 33 97.0 32 ................................C AGACATAATAGTCATTGTGTACATCTTATGCC 25883 33 97.0 33 ................................C ACTGTGCCACACCCTTCCGCATATTGGCGTGTA 25817 33 97.0 32 ................................A AGTTGCTCAACACCGATTTTAATTGAACGCTC 25752 33 93.9 0 .........................A......A | ========== ====== ====== ====== ================================= ================================== ================== 45 33 98.2 33 GTCACACCCTTCGTGGGTGTGTGGATTGAAACT # Left flank : TGATGATTATCCAGTATTTTTAATCAAGTAGTGTATGTTTGTATTGATTACTTATGATGTAAACATTACCTCGGCTCATGGTGCGAAACGTTTACGCAATGTAGCAAGGGCGTGTTTGAATTACGGAAAGAGAGTTCAAAACTCTGTTTTTGAGTGTATTTTGACGGAATCTCAGTTTTTCGTATTGAGGGACCAGTTAAAAGGGATTATTGATACTGAACAAGATAGTATTAGGTTCTATATTCTTGGGAAAAATTGGAAACGTAAAGTTGAGACTTTGGGTAAGGATATGGGGCTTGACTTTACTGGTGAGCTTATCATTTAATGTATGAGGGTGCGAACCTATAGTATTGCAAAATAACCTATAGTTTCGCACCTTCTTAAAATCAGTGACTTACAAATATTATGCCTTTTATAATATTTTACGTGTAATTATTTTGCCATCTTTCGCAAAATAATTATCTTTGCATCATGATATTCAGCTATTTGCTGAATATGCA # Right flank : GAAAACAGATTTTATTTTCTGAGCCCACTTGAAAAAGTCATTTTTACGAAAACGTGCCATTGATTGTCAATAAGTTACAATGACAAAAAATATGATTCGGGACTTCTTTAAGTGGACTCAGTTTAGTATTATACAGCAATCTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCAGCCACAGCATTTGACTCCTTCGGTCACCGCATTCGACTCCTCCAGCCACCGCATTCGACTCCTTCAGCAATCGCATTCGTCTCCTTCGGTCACTGCATTCGACTCCTTCAGCCATCGCATTCGTCTCCTTCAGCCACAGCATTCGACTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAAGTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCATGATTTCGGCACAATTGTCAATACATGCAAATGGTAAAGCAAAAAGTGGTTTACTCCTACCTTTATGATTCTTATACGAAAATGTTTTTC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //