Array 1 1535-181 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWD01000078.1 Vibrio cholerae strain VcCHNf4 Scaffold78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1534 28 100.0 33 ............................ ACAACACACTAAGTCTCCAAGCTCGACCAGTCG 1473 28 100.0 32 ............................ TCAAGAACACGGAAACACTCTTTAAACATCGC 1413 28 100.0 32 ............................ TGTCGCCTTGGTTAAAACTCAGAGAATCAATA 1353 28 100.0 32 ............................ AATACTGAAAAGTTAACGCGATAGTACGTTTT 1293 28 100.0 32 ............................ ATCAAACGCTATGATGATGATTCATAATCCAT 1233 28 100.0 32 ............................ GTCTTGGATGTCCGCAAGATCTTTTGAATCCT 1173 28 100.0 32 ............................ AGCATTGAAGGCAGCGCGTCAATAACGGTTGG 1113 28 100.0 32 ............................ CAGGGCCTATCAAACCGATCTGCAATCGGAGC 1053 28 100.0 32 ............................ AGGCAGAACAAAGATTACTGGATGCCGGATGT 993 28 100.0 33 ............................ AATCGGATAAAGGCTTTCAGTTCTTTGTCACTC 932 28 100.0 32 ............................ GCCAGAGCCTGAATCACTTAATTTATTAAGTA 872 28 100.0 32 ............................ GCTCGAAGGCACGATAGTAGAAATCGCTTTCG 812 28 100.0 34 ............................ CATTAAGCGAGCTATTCCTTGAAGCATTTTCTTT 750 28 100.0 32 ............................ ACCCGCTTTACGGCCAGTGTAAAGACCGGACA 690 28 100.0 32 ............................ TTTATGTCCCAACTTCTAACTTGCTTGGAGTT 630 28 100.0 32 ............................ GATCAGTATCGAGCACCCAACAATGGCGGATA 570 28 100.0 33 ............................ ATTGCCTACCTGATGTCGGGATTGGGTGTGTTT 509 28 100.0 32 ............................ CTGCGGTATAGTCATCAGTAACGCCGCGGGTA 449 28 100.0 32 ............................ TCTTGGCGCTTTAATTGTCATTGATGAATGCC 389 28 100.0 32 ............................ GTCAATTGATTTAGATATGTATTTAGCAATGT 329 28 100.0 32 ............................ AATTTGCAGCGCGCCGCCCTCGGTGAGCGTTG 269 28 100.0 32 ............................ CTAACCGTTAATCAACTCAAATGACGCAATCT 209 28 100.0 0 ............................ | A [185] ========== ====== ====== ====== ============================ ================================== ================== 23 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTTTATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCAT # Right flank : ATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATATTCTCCCTCGCCCCGTAAACTTTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //