Array 1 398508-399332 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001985.1 Dickeya zeae MK19 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 398508 29 100.0 32 ............................. TAAGTGAGTCTAAGGCTAAACGCCTTGAGGCA 398569 29 100.0 32 ............................. AAATTTATCTATTACCTTGCCATAAATATTCA 398630 29 100.0 32 ............................. TCAAATACCAACCTAGTTAATGCGCTGTTGGT 398691 29 100.0 32 ............................. TATGTCAGCGGACAGGTCGTCGCGATGGATGC 398752 29 100.0 34 ............................. AGGCCCATGGGAGAGAGTGCCAGGTGCGCTTGCC 398815 29 100.0 32 ............................. GGGAAGCGGGTGGTGAGCAATTCGTGCCGGTG 398876 29 100.0 32 ............................. GGTGCCTCTGCGCTATCTTGTCGATGCTCACG 398937 29 100.0 33 ............................. GAGTTACGGGAAATGGCAAAGCGTGCTGAATCC 398999 29 100.0 32 ............................. CTGGACATGAACAGTATGCCGCGTCTTTTTAC 399060 29 100.0 32 ............................. TATGGATGTATCTGTTTTTATTGAGAGAGTCG 399121 29 100.0 32 ............................. CAGGCCGGATTATTCCAGACAATTCTAGGAGT 399182 29 93.1 32 ........T....T............... TTCAAAACTCAAAGGCTCGCTTCTGCGGGCCT 399243 29 96.6 32 .............T............... CTCCAGCGCAGCGCGGCGGAATTTACTATGAC 399304 29 86.2 0 ..A......................GG.A | ========== ====== ====== ====== ============================= ================================== ================== 14 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGTGAGATTGATCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGGCACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTACTGGAAGTGCGCGCCGGGGTTTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGAGCAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGGCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCATGTCTCTAAAACGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : AGAAACAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTGGGTGACCGTCAGACAGGGTTAAAACGACAGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGACGGGTTTTTTGAGCGCCAGTGTCTTCGCTGCCGGTGCGGATGAGGGCGCAATCATCGGTCGGTTGCCCGCCAGATTGTAAGAGCCGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCAGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 747473-748233 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001985.1 Dickeya zeae MK19 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 747473 29 100.0 32 ............................. GTGACGTTTGATAACGCCCCGCCAGGAATGCA 747534 29 100.0 32 ............................. AGACTTACTGCAGCTCAAACACTGCTTCCCTG 747595 29 100.0 32 ............................. CATGTGATTGCGCCCTTGCAGCGCATTACAAC 747656 29 100.0 32 ............................. TCACACCTATGTAATTTTCAAATATCCATCCG 747717 29 100.0 32 ............................. GGCTTTGTATTGCTCTGTTAGCTCCGAATACT 747778 29 100.0 32 ............................. GCTGCTGGGATCCGCATGAAAATCGTTATGTT 747839 29 100.0 32 ............................. AGCTTTTGGCTCTGGTTGGACTATCGTTAACC 747900 29 100.0 32 ............................. GATTGGAGCAGCTATCAATGCGGGTAAATATT 747961 29 100.0 32 ............................. TCGATGCTCTCTTGCTTGGCCTGCTGCGCCTT 748022 29 100.0 32 ............................. CTGTTACATCGACGTGGTTATTTTTGTGTGAG 748083 29 100.0 32 ............................. TCGACGGCTGGCACGTCAATACGTTGACGAAT 748144 29 100.0 32 ............................. GCATAATCCATGCCCCTTGCCCCTGATTCATA 748205 29 89.7 0 .........................G.GT | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAATGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCACTTCAGCGCTGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTGGTAATGCCGGTATAAAGCCATCCGCTGCCAGTACGTAGCAGATACACAAACCAGATAGCCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACAAGCATCATCGGTGGATATGGGTGAGTAAAATCACCACCTTTATTTATCAATCGGTTAGCGCTCTTTAATAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTGCCGTGATAGCACGGCACAATCCGTCGCGATGTGTTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAAAGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACTACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATCTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAACGCGGCCATCGCTTATGGTGCTGACGAGGTCGACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3752161-3752609 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001985.1 Dickeya zeae MK19 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3752161 28 100.0 32 ............................ GGAGATATTCAAGGCCAGTGATGGTAAGCAAT 3752221 28 100.0 32 ............................ GTATCGTCAGCCACGGGCGACCGGTCCGCATC 3752281 28 100.0 32 ............................ TCGAACCATTTGCGCACGTCGAACAGTGATGC 3752341 28 100.0 32 ............................ TTAACGTCACATCGCCGTACATTTGAAGCTCA 3752401 28 100.0 32 ............................ ACATGACAGCATAGTTGTAGGTAAAACCAAAA 3752461 28 100.0 32 ............................ GGATTAAGTCCATACTGATTGGCGACGATCAA 3752521 28 96.4 32 ...........C................ CAGTAATCAAAACCAAGGCCTAGCAGCGAGAA 3752581 28 78.6 0 .............C......AG.C..GG | A [3752603] ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTGAACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGAAATCCCGCCCATGGCGATATCGCACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAACTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCAGCCAGCCCCAATAACAACATCAATGAAAACCGCTTTTTCATAAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTCGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCCAAAACATGAATTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGAACCACCGCCCCCCGCATACACTATTCGACAAACACATTCGCCTACAGCCCCAAAACGTTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCCGCCCCCAGCGCCAGTAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCGGATAGCCCAGGCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3757887-3758278 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001985.1 Dickeya zeae MK19 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3757887 28 96.4 32 T........................... ATCAGATGACGATTACGATGGCGTTGATGTCA TA,G [3757890,3757893] 3757950 28 100.0 32 ............................ GCTATTTGCGACTTCAAACCCCCTGGCTGATG 3758010 28 100.0 32 ............................ AGTGTAGGAGCGAGAGTATGCAGGATCGTGAA 3758070 28 100.0 32 ............................ AACGACACCCAACTCAACCCCATACGCGATCG 3758130 28 100.0 32 ............................ TTATCGCGCAGGGCATCCAGTCGGTCACGCAC 3758190 28 100.0 32 ............................ ATCATAAGTTTGTAAAACGAGTATGGTGGAAA 3758250 27 78.6 0 ...........CAC.........-..CG | GC [3758269] ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GGGTGGTTTCGTGCGGGATAAACCGAGTCGCTTCTTTGCCACATCATCGCACGCACGACAAGGAGAGGTGCAAGCGCCACCTCTCCTTGACCTCTGGCTTGATGGCTAAACTACGCCGCTAACGCGGTGCCTTCGGCGTTCGCCTTCGCTGTTCGGACCGCCCATTACGCGTTCCTTACGCGGAATGGGCTTGCACGGCATCCATGCCGTGCATCCGGCGAAGTCGCCCACCTCAGCGTAGTTTTAACGCCAGTAAACCCGTCAACAGCTGCCTGTGCGGCAGTTCACCGCAGCAAGGGGCCAGAGCTGCTGATTGAACTTTTCTAAGCTGCCTATACGGCAGTTCACTGGGAGCCAATCGCTACGGGTACACTGAGCCTTTTCTAAGCTGCCTATGCGGCAGTGAACATGACTCAGCGCCATATATTACGGACGAAGAATTTCTAAGCTGCCTATGCGGCAGTGAACGTTCAGGTCGGGTTCCCACGGCGACGTAGTGA # Right flank : GGGTTTACTGGCGTTAAAACTACACTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCGTGGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCGCGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTCCACCACACCACCCTATAAACTACGCCCTTAATCCAACAAGCGCTTTCCCCGCTTCGGGGATAACCTGTCAGAACGACGTCCAATCACTATTGCTACCCGCTGCCGCGGCGGCCCGCTTTTCCGGCAGCGCCGGAGATAGCACCGCTGACGGACGGGCTGGTGGTGTTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //