Array 1 1086558-1083541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBID010000001.1 Frankia sp. CH37 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1086557 29 100.0 32 ............................. ATCGCGAGGATCTTGGGCCAGTTGGCGGACAG 1086496 29 100.0 32 ............................. TGCGACCCGTACTCCTGGATGATCGCCGGCAT 1086435 29 100.0 32 ............................. CGGCCGTCAACCTCTCTCCCGCTGTGGAGATA 1086374 29 100.0 32 ............................. TACTTCCGGAACAGCACGTTGGCCTTGACGAC 1086313 29 100.0 32 ............................. GTGCAGACCTTCTTCCGGGTCGACGCCGCCCA 1086252 29 100.0 32 ............................. CCCGTGCACCGCCACGGGCATGATCGCCCGCG 1086191 29 100.0 32 ............................. ACGCTGACGAGGATGAACCCGGCCCCGTAGCG 1086130 29 100.0 32 ............................. GTGGGCTGCCAGGTGCGAGGCGTCCAGGCTTC 1086069 29 100.0 32 ............................. TGCGCCGGGATGGTGAACTCGTCCCCGCTCAT 1086008 29 100.0 32 ............................. ACCATCGCCTCGCTGCTGGCGTTCCTGCTGGC 1085947 29 100.0 32 ............................. ATGCGTGGGAGTGGTCGGAGCCGTTCGACCAG 1085886 29 100.0 32 ............................. CGCATGCAGGGCGACTTCGAACTGGTCAACCG 1085825 29 100.0 32 ............................. TTCCCGACCGGCCCGTAGTCGATCGTTACGGT 1085764 29 100.0 32 ............................. AACCGCGTGGTGAGCGGGGAATCGGGTGAGTT 1085703 29 100.0 32 ............................. TGCGCGCTGGTGCCGCTGTGGCGTGCCAGGAA 1085642 29 100.0 32 ............................. ATCGCCCCGCTGATCCTCAACGCCATCCGGGA 1085581 29 100.0 32 ............................. GCGCTGTGGCTCGGCGAGCACAACGCCGTCGT 1085520 29 100.0 32 ............................. ACAGTGGATTCTCAGTCCACAGAGCGCGGGTT 1085459 29 100.0 32 ............................. GGCCAGAGCTCGAGCAACTACCGCATCTCCCT 1085398 29 96.6 32 ..................T.......... ACGGCCGCCACCGGATCCTCGGTGATCGTCGA 1085337 29 100.0 32 ............................. GCGCTCGCCCTGGCCGCGCTCCTGGACCGCCT 1085276 29 100.0 32 ............................. ATGATCAGGATGCCCATCGCGCGGCCCTGGCG 1085215 29 100.0 32 ............................. AACAGTCCGAACGGGCCGCTGTTCGAGAAGGG 1085154 29 100.0 32 ............................. CAGCGCATCCTCCGGGGTGAGAGGAACCGGAG 1085093 29 100.0 32 ............................. ACCCTCGGCATCCATAGCCTCACAGCACCACT 1085032 29 96.6 32 ............................A ATCGGGGCGCCCTGGTAGTCGCGGACGGTGAC 1084971 29 100.0 32 ............................. TCGGCGTCATCGACGAGCGCCACCAGGCCACG 1084910 29 96.6 32 ..T.......................... CCGAGCGGCACATTGCCGCCCTAGCCGCCGGT 1084849 29 100.0 32 ............................. CTCGGCAGCAACGCCTCGGGAACAGCATTCGC 1084788 28 96.6 32 ........-.................... CTGTGGCGCGACATGCAGGACCGGCCGGGCGG 1084728 29 100.0 32 ............................. AATCAGATCACAGCGAACGCGATCGAGATCGG 1084667 29 100.0 32 ............................. TGCCCACGGCCAAGGGTCACGAGCCTGCCCGC 1084606 29 100.0 32 ............................. TCCGCCGTGCGGTTGTCGCTGATCAGGATGCG 1084545 29 100.0 32 ............................. GCGTAGAGCGCGACCTTCCAGAAGGGATGCCT 1084484 29 100.0 32 ............................. AAGGAAACCTGGTGGCTGGACTCTGAGTTCGG 1084423 29 100.0 32 ............................. GAAGGAGCACCCGCATGACCGCCGATCCGATC 1084362 29 100.0 32 ............................. CCCGGCGGGTGGCGAGCGTCCGCATGTCCGGG 1084301 29 100.0 32 ............................. GATCTCGCGACCAACGCGCCTGTCGTCAATGC 1084240 29 100.0 32 ............................. ATCAGCTTCGCGGGTGACGAGGTCGTGCTGCC 1084179 29 100.0 32 ............................. CACCTGCCGCAGAGCGCGAACACCCTGGCGGA 1084118 29 100.0 32 ............................. GGGACCGTGCACCAGGCGCTCAACGCGCTGAT 1084057 29 100.0 32 ............................. TCGGATGCCCGCCTGCGCCACTGCCTGCGGGC 1083996 29 100.0 32 ............................. AGACCGAGACCCGATGAGCGCACACCGCGCCT 1083935 29 96.6 32 .................A........... TCCACGGTGTTCTTGGACATCGACGGCCGGCG 1083874 29 100.0 32 ............................. ACCTGCTCTGCGGGGCCTGCCGGACGTGGTGC 1083813 29 100.0 32 ............................. GTTCTTCCCCGTCGCCATCAGACGCTCGCCCC 1083752 29 100.0 32 ............................. ATGCTCAAGCTGCGGAAGTGCGGCTCCTTCGT 1083691 29 100.0 32 ............................. AATAGGGCTGGGCGGCAGATCTGGCAGACCAC 1083630 29 100.0 32 ............................. TACCTGATCAAGACTGGTTCGCGGCTCGGGAT 1083569 29 93.1 0 ...........A..T.............. | ========== ====== ====== ====== ============================= ================================ ================== 50 29 99.5 32 GTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : GCCGTCGACATGGTCCACCTCTGGGACCCCGACCTCGGGGCCCTCCCCGCCGGCGTCAACTACAGCAACGACATCCCGGCCGCCGGCGACGACATCCCGGGGCTGAGCCCGCCGGCCGGCACCCTCGACAACGGCGACATCGAGGACGACGACGTCCTCATCAACCTGGGCAACCCATGGCCTCAATGATCGTCATCTCCACCACCGCGGTTCCCGACCACGTCCGCGGCGCCCTCAGCCGCTGGCTCATCGAACCCACCGCGGGCCTGTACGTCGGCACCGTCTCCGCCCGCGTCCGGGACGAACTCTGGAACGCCGTCGCCGCCAGCGTCGCCGACGGAGCCGCGGTCTGCATCCACCCCGCCGACACCGAACAGGGCTTCAACATCAGAACCGCAGGCGAGCGCCGCCGCCACGTCCTCGACTACGACGGCATCCAACTCATCGCCCTCAAATCACAACAACAGCAGGAGGCCCCCTAAAAGCCCAGGTCAGCAAGT # Right flank : ATCGAACCGATCAACAGGCCACACAACAAGGCGCTGGCTCTGCTCGTGAGATCCGACTGCAGTTGGTCGTGAGCGCTGACTGCACCGCATCGGGACCGGCGGCTTGTGCTCACGACTTCTGGATGAACCCCTCGTTGCCGCTCTTGACCGCTGCCAGCAGGCACTTCGCCCCGGCGCTGGAGGCACTGCAGTTCGCTCTCGCGAACATCGATCGGCAATCTTGATCGTGAGATGCGGTCGGATGGCGCGAACATCTGCAGCCCGTTCTCACGAACAGGCCAAAGGCGTCCTCCCCACGTCCGTGGGGGTGATCCGGCTTTGATGGCGGCCCGAGTATCTGCCTCATCGTCCTCCCCACGCCTGTTGGGTGATCCGAACATTGAGGTGGACAACACCATTTTCCGCCGGTGACGCAAATCGCAAGTACCCCGAGGGGTCGGCCTGGTTGCCATGTAGAGGATCAGAACGGGTCGATCCCGGGACCCGGGGGAACGATGTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1096193-1098172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBID010000001.1 Frankia sp. CH37 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1096193 29 100.0 32 ............................. ATCCGGCAGTCTGGCGCCTTCTCCTCGTCATC 1096254 29 100.0 32 ............................. ATCGGTAAGGGTGGGCCGACCGCCGCCAAGGC 1096315 29 100.0 32 ............................. CCGGTGTGGCGCTGAACGCGCCGACGGCGAGC 1096376 29 100.0 32 ............................. TCCGAAGGGATCGCCCCCACCAGCGCCCCCGG 1096437 29 100.0 32 ............................. ACCACCCGGGCGCGGGGGTTGCAGGCCACCAC 1096498 29 100.0 32 ............................. TTCGTCACGGCTCACGGCACCGCCGATGTGAC 1096559 29 100.0 32 ............................. GATGCCGCGCGGTCACCGATCCCGCTGCTGGT 1096620 29 100.0 32 ............................. CCGTAACCGTTGTCGTCCGCGACATCGAGGGA 1096681 29 100.0 32 ............................. TACGCCCGGGCGCCCGGGGTGAGCTGGGCGAC 1096742 29 100.0 32 ............................. CCGTCCAGCGCGAACCTCACCGCGTACAGGTC 1096803 29 100.0 32 ............................. GCCTGGCTTGACTTCGTCCGCGCCGTGAAAGA 1096864 29 100.0 32 ............................. TACTTAGGGCTGGTGACGGTAGGAGGCCTCCT 1096925 29 100.0 32 ............................. TCGATTTGGCTGCAGCGGATGGCCAACGATGG 1096986 29 100.0 32 ............................. GCCGCAGGCGTTGGTTTCATGTCACGGTCGGC 1097047 29 100.0 32 ............................. GGTCGGAGTCGACCCGAGCACCCCCCGCGCGG 1097108 29 100.0 32 ............................. TCGAGATGTTGAAGGCGATGACCGGGGCGGAC 1097169 29 100.0 32 ............................. TCGCGGTCGTACGGCACGGTGTGGGTGTGGCT 1097230 29 100.0 32 ............................. CTGCGGTCCTTCAGCCGGACGCTCATGGCTGC 1097291 29 100.0 32 ............................. GGCATGACCCTCGTGCTGGCGCAGTCCTTCGG 1097352 29 100.0 32 ............................. TCGTCGTACTCGATCCCCGCCTCGTTCAGCGC 1097413 29 100.0 32 ............................. GAGCAGCGCGCCACGCCGCTCGTCGACGCCGC 1097474 29 100.0 32 ............................. GCGGCGAGAACGTGTTTCGGTCCCCCACCTGC 1097535 29 100.0 32 ............................. ATCGGGTTCGCTCCGACCCGTCGTACCGCCGA 1097596 29 100.0 32 ............................. ATCGGGTTCGCTCCGACCCGTCGTACCGCCGA 1097657 29 100.0 32 ............................. TAGCGCGCGAGTGTCCCGTAGTTTGACGGCCC 1097718 29 96.6 32 ....................A........ AACGGCTTCAAGGACGCCACCCTCGACCCTGC 1097779 29 100.0 32 ............................. GAGAAGGGTATGGCGACACGTAAGGCGCAGCC 1097840 29 100.0 32 ............................. GCCGCGACCGCACCCACGGCGCGCTTGTGCGC 1097901 29 100.0 32 ............................. AGGACTCACATGGATGGTACGACGGGCGTGCG 1097962 28 96.6 32 .....................-....... CAACGCGAATACTCGGGTGCGCGATGGATTCT 1098022 28 96.6 32 .....................-....... CAACGCGAATACTCGGGTGCGCGATGGATTCT 1098082 29 100.0 33 ............................. TGCACAATCGGACCGCAGCAGGCTGTCAACGTC 1098144 29 89.7 0 ..T.....G..........A......... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : CGACGCCTCCTCATGACGGAACCGGCCCGACGCCCCGACCGTCGTATAGCTGCCCTGCAACGCAGCGAAAGCCTTCGGAACCTGCATCTGAAAGCCCGGAGTAATCTTGCCGATATCGTGCAGCGCAGCCCAGAAGGCGACCAGGCGACCGGCGTCCTCCACAGACGCTCCCAGCTCGCGGGCCACCGCCAGACGCGCGGACTCCGGCACCGTGCTGCGCCACAACACCTCAACGGCCGCGCCCGTGTCGACCAGATGACACGCCAACGGATAGGCCCACGGCAAAGAGCCGTACTTGCCCCAAAGCCGCAGGTCCACCGCTGCGCCGTTGCCGGCGTCAGCGGTACACCGCTCCCCGCGATCTCCCCCAAGATCCATCCTGGAAGCGTAGTTCCTTGCTAGACAGCCATCACTGGGCGGTGCCCCCGAGGCGTCACCGCTCGGCCGCCAAGAAAACACAACGGATGCAGGGGGCGGTATAAAAGGCCAGATCAGCAAGT # Right flank : GCGGGCGCAGTAGCGCGGCGAGAGTCTATGTTCCGGCAGATTATAGGTTTGAGTTTGGTTGTGGGGGGCTGGAGGTCATTGGGTATTGGGGTGACGGCGACCTCCGTGTGGCTTGGATTCCTGGGCCCCGTTCGTGCGGTGGCGAACGTGCGGTGGTAAAAATTTTGGGACGGCTACGGGTTCCCCTGGCGGCCTTCAGGAGGTTCTGAGGTTGGCGAGTGAGCATCGACGGTTTTCGCGCTCCTGTGGTGTAGGTCTCGGGGAATATCTCGGGGATCGGTAGGCTGAGCGTCCATTGGTATGACGAGTGTTTGTTTGCGAAAAGGTTCCATCCGACGCCCGGGAGCGCTGGACATCTTGCAGTCAGACGGTCGGCGGATCGCGAGGTCAAGGAAATGGTGTGATCGCGCCTACCGCGGTCCGTCTGCGGTCCGTGTGTGTTGGAGTCGGTGACCGTGAGGGAGGAGGAGCAAGCCGCTCCGACAGAGTCTGCTGAGCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8196388-8193848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBID010000001.1 Frankia sp. CH37 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8196387 30 100.0 37 .............................. AAGGACGTGCGACCCGCCCGCCGCTGGACTGGGTCGC 8196320 30 100.0 38 .............................. GACCGCGTACAGCACGAATGGCAGGCCGCCCATCGCAA 8196252 30 100.0 36 .............................. GTCTTGGTGCCGACACAGAGGGCGCAGGTCACTGGA 8196186 30 100.0 34 .............................. CAGGTCGAGGTCCGGGTCGCGGCGGCGCTCTCGC 8196122 30 100.0 36 .............................. ATCCGAGCGTGGGACAAGGGCGACGTCGACCTCCTG 8196056 30 100.0 37 .............................. CCGTGGACGGTGCGGAGCTTGAAGCACATTCTCACTT 8195989 30 100.0 39 .............................. TCCGGCCGGCCGCCGGTCCGGTTCGTCACGTGCACCCGG 8195920 30 100.0 35 .............................. CGCCGCGCAGGAAGTCCACCGCCGCACCGACCTGA 8195855 30 100.0 36 .............................. ACCTCATCCGGGCCGGCGTGGCGGACCAGCGCCGTC 8195789 30 100.0 36 .............................. GTGACGGTGGCGGTCCGGACCGCCCGCCAGCTGATC 8195723 30 100.0 37 .............................. ACTATCTGTCGTGGCGGCAGGCGGATGCGTCCCGCAA 8195656 30 100.0 35 .............................. TTCAAAACCCAGCTGTTCACGGACGGCGTCGCGAA 8195591 30 100.0 35 .............................. AGGCGGCGGCCGTCCGCGCGGGAGGCGCGGGCCGC 8195526 30 100.0 36 .............................. ACGAGTCGCGGGTGCCCGAGCCGGCGACGAGCTGAC 8195460 30 100.0 37 .............................. TCCAGCGCGGCCTGGTCGTCCTCGGTGGGGGTCCAGG 8195393 30 100.0 36 .............................. CTGTTCAACGCCTACGCGGAGTGCACCGCCTACCAG 8195327 30 100.0 37 .............................. CCGGCCGATATGTGCTGACCGCCGGGCATGCCGTGGA 8195260 30 100.0 35 .............................. AGGTCCTGTCCGCCTTCGTCCGCGAACACACCCGA 8195195 30 100.0 36 .............................. CGGTGACGTCGTGAGCGTGGATGGCGTGCGGGTCAC 8195129 30 100.0 37 .............................. AGATACGACGCCCGAGACTGCTGCTGACGCATGTCCA 8195062 30 100.0 37 .............................. GCCAGGTCCTGGCCCTGGGCAGGGCACGCGGCGCACT 8194995 30 100.0 33 .............................. TCATCTGCGCCGTGACGGACCCGAGGGCCGCGC 8194932 30 100.0 36 .............................. GCGTACGCCGGGGCGGTCTCCGGGGCCAACGCGCAC 8194866 30 100.0 38 .............................. GCCGGCGCGAACGCGGCACGGCAGTTGCCGCACACCAC 8194798 30 96.7 36 .C............................ TGCTTCTGGAGGTCCGCCACGGTCAGATCCGGGGTC 8194732 30 100.0 35 .............................. ACCCGCAGCAGGACGGCCGTGACCGGTACTGGCAG 8194667 30 100.0 36 .............................. CCGTGTAGGGCGTGAGGTTGGGTGTCCAGCCGGCCG 8194601 30 96.7 36 ..........................T... ACTATGCGGGAGTGGGCTCGGACCCGGATCAGACGG 8194535 30 96.7 38 ....T......................... GACCCTGGTGCGGCACGGTGCGACCGCAGACGTCGCAC 8194467 30 100.0 38 .............................. GCCTTCCCGTCTCCGGCGTCACGACAGTCACACATCCT 8194399 30 100.0 34 .............................. GAGGCGACGAGTACGCCGCGCTCGTGCCCGGCGC 8194335 30 100.0 36 .............................. ATGCTCCTTGCCGGGATGTCGAGATGGACCGGCCAG 8194269 30 100.0 38 .............................. ACCGGACCCGGGGGCAACATGCGCAATGTGGGCTCCAC 8194201 30 100.0 37 .............................. TCCGTGTGGTCTGCGCTCCTGAACTGAGCATGGGCCG 8194134 30 100.0 33 .............................. CTTGGGGGATGACTCGCCAGACGCCCGGGACCG 8194071 30 100.0 36 .............................. AACGCCAGGAGCGGCTCTACGGCGAGTTTCGAGTCG 8194005 30 100.0 34 .............................. TGACCCCCCGAAACGTGTCGGGCATCCTCCTCCC 8193941 30 100.0 34 .............................. CGGCTTTCCGGCGGGAGTCGGGCGGCTCCGCGCA 8193877 30 90.0 0 .........................C.GG. | ========== ====== ====== ====== ============================== ======================================= ================== 39 30 99.5 36 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : TGTACCACCGCACGCTGCGCCGGAAGGTCTCCTACGAGGAGCTGATTCACCTGGAAGCACTGAAAATCGTTCGCCTCTGCCTCGAGGACAAGCCCTACAAGCCGTTCCGGCCGTGGTGGTAGACCATGTTCGTCGTCCTCGTCTACGACACCGCGGCCGAGCGGAACCCACTCGTCCTGCGGACCTGCCGGAAGTATCTGCACTGGGTGCAACGGAGCGTCTTCGAAGGCGAGCTTTCCGCCGCCCAGTACCGAGCCCTCACCACAACACTGCGAACCGAGCTCGACATGGGCTACGACAGCATCCGCATCTACCGCACACGCTCGCCGCAGCTCGTCGACACCGAATGGCTCGGCCAGGAGATGGGCAACCAGGACTCCATCCTGTAGCCACTCCCGATCATGGCCCTGACCTGCGCTGTTACACTACCGCCGGACCGCCGCACTTTCGCCCCCACAACCACCGCCAACAGGCATCCCGACCTGCATGTTCATCTTGGG # Right flank : GCGACGAGGACCCACGTTCAGTGGGCGATCGAATCCGTACCTTTGGTCATGGTGGCGGCGAAGGCGTTGAGGCCGGGCAGCGCGGCGCCATCGCGGTCGAACATTGCCAGGTTCGCCGCGGGCATCGGTTCGCCGGGTTTCGGGCTCACGGTGAGCCAGCCCGGCTCCCACACGAAGAAGCCCAGGCCACGGTGGTCGGGCACGTCATTCAGGATCCGGCGCAGCGCGGCGAAGAAGTTTTCCTGGCCGGCCGGAGTCGCCGGCAGGGCGGCGCCGTCCGGTAGCTGGTCGGGGGTGCTGACCCAGTCGCCGGGCTTCGCCGCGGCCAGAGTCCGCGGGTAGGCCGTCTCCGCGATGAGGATTTCCCGGTGGTATCGGGAGGCGAGCATGTCGAGGTTCGCGCGCAGGGCGGCCAGCGAGCCGTTCCAGAACGGGTAGTAGCTCAGGCCGATGATGTCGAAGGAGGTGACACCGGCCTGGATCAGGCTGTCGAAGAAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 8206819-8208029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBID010000001.1 Frankia sp. CH37 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8206819 30 100.0 36 .............................. GGTCGAGCTGAACGGCGAGGATTTTCTCGGCGACGC 8206885 30 100.0 35 .............................. CTGTCCGGCGCCGGCGCGGGCGCCCTGCTGGCCAT 8206950 30 100.0 35 .............................. GTAGTTTGGATACCACGGGTGACGAGAAGTGGCAG 8207015 30 100.0 34 .............................. TCGAGCCCTACCTCGACAGCCTCCACCGGTTCGT 8207079 30 100.0 36 .............................. CCTTCCCACAGGATCACCGCAGGCGCGGGCTCGCCC 8207145 30 100.0 37 .............................. CGGTGACGTTGATCTCGCCTTCCCACAGGATCACCGC 8207212 30 100.0 36 .............................. GCCCGGCGACCCGCTGCGGCGCCGTCGTGGTAGCCG 8207278 30 100.0 36 .............................. ACTGGACCGACGTGGGCCAGCCGATCGGGGAGCGCA 8207344 30 100.0 34 .............................. GGCCGACGTGCCCACGGATGACATGGACGTCCAA 8207408 30 100.0 37 .............................. GCTACACCGGCGGCGACGACACCCGCGTCGCCCCGTT 8207475 30 100.0 34 .............................. GCTTCCGGTTGGGCTTCCGCGACGTGCTCGTCGG 8207539 30 100.0 35 .............................. CTCAGGCGAGACCGTCTGATGCCGCGGACACACGG 8207604 30 100.0 35 .............................. GTCAGGTTGCGGCTCTTGAGGCTCGTGCCGGAGCG 8207669 30 100.0 37 .............................. TCCGGTGCTTGCGCCCACGTGGCCATCAGGCGCACAG 8207736 30 100.0 36 .............................. GAGTCGGCACCGGGGGGAGGGAGTGCCTTGCCGCGG 8207802 30 100.0 35 .............................. GGTGATGCCGGCGGTGGTCAGCGCCAGTACCTGGC 8207867 30 100.0 36 .............................. GGGTCCAGCGGGCCGGCGCGGTGCCCGTGCCGCTGC 8207933 30 93.3 37 ............T...T............. CGCCGCAGGCGCCCCGCCAGCCCGGCCGCCGCTTCCA 8208000 30 90.0 0 .......................CT...G. | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 99.1 36 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : CTGGGCACGGTCCTCGCTGCCCGGGTGCTCGCCGAGTTCGGGGACGACCCGAAGCGCTACACCGACGCCAAGGCCCGCCGCGACTACGCCGGCACCAGCCCGATCACCCGCGCCTCAGGCCGCAAGACCGTGGTCATGGCCCGCTACGCCCGCAACAACCGGCTTGCCGATGCCCTGCACCAGCAGGCCTTCTGCGCCCTGAACGCCTCGCCCGGCGCCCGCGCCTACTACGACGCCATCCGCGGCCGCGGCAAGTCCCACCACGCCGCCCTCCGCCAGCTCGGTAACCGCCTGGTCGGCATCCTGCATGGCTGCCTCAAGACCCGCACCCCCTACGACGAGGCAACCGCCTGGCCGCGGAACGTCACACTCACACCCGCCGCTTGACATCCAAAAGCATGGGATGTCTGACCTGCGATGATGCATCACCGGCGGATCGCCGCAAATCCCGTCGCGCCAAGGCCCGCCGCAACCACGCTGACCTGCTTGTTTACCCTGGG # Right flank : CAGGTAGCCGGATACCTCGTGCTCGCTGGGGCCGAAACCGCTGATTTGGTGGTGTCCGGCGGGTCGCTCTCGCCGCTGAGATCAGGCCGGGGTCTGTGAGAGGGCTTCCTCGACCTGGCTCCGTATCTGCGACGGGTCGACGCCGAGTTGGGTGAGCAGCTGGTGCCCGCCGCGGACGTCCTCGCCGAACAGCGCGAGCAGCAGATGTTCCGCGTCGATGCGTTCATGTCGACGGGCGGTCATCTCCTGAAGCGATCGACCCAGGACGTTCTTCGTGCGTGGGGTGAAAGGCAGATGAGGCCCCGGCGTGCCCTCGTCCGTGCTGCCGAGTTCCCGGGCGAGGCGGCGGGCGTTGTCGACCGTCAAGCCAACGGAGCGCAGCAACGTGCCTGCCCGCCCCGAGTCCTCATGGAGCAGGGCGAGCAGGAGATGCTCCGTCCGGATAGCGCCGTGACCGAGCTGGAGCGCCTCCTCCTGGGAGATCTCGATGACGCGGCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //