Array 1 474297-474548 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWH01000001.1 Xylanimonas oleitrophica strain PW21 NODE_1_length_797522_cov_170.579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 474297 29 100.0 35 ............................. GCGTTCCGAACGACTGGGTCTTAGGTCGACTCGCA 474361 29 93.1 20 ............A...........G.... TGACCTGGTACGGCCCGAAC 474410 29 86.2 32 A..T........A............C... AGACGCTGCAACAACAGCGCACAGGGCATGAA 474471 29 86.2 20 ..AA........C............C... GGGCGGTGTAACAGCATCGC 474520 29 82.8 0 ...........C.C.......T.CC.... | ========== ====== ====== ====== ============================= =================================== ================== 5 29 89.7 27 GTGCTCCCCGCGTGAGCGGGGGTGATCCG # Left flank : ACAGCACGAGGAGCCGACCATGAAGACCAACGCCTGGACCCACCCGACCACCGGCCAGATCCGCCACTACCTCGACAACTACGAGGTCTGGGGCCTCATCGCCTACGACGTGCACGGCGTCGCCAACCGGGGCCGTGTGCTGTCCGCGAAGTTCTGGCTCGACCAGGACGGCGTCCTGCACATCGACCGCCTGGAAGAGCGCGGCCAGATCCGCGAGTACAAGCTGCGCGCCGCGATCGAGGCTGCCCTCGCCCCGGCCCCCGAGGGCGAGCCCGCCCCCGAGACCGCCGAGACGCAGGCCGCCGAGACCGAGGCCACCGAGGCCGCCACCGAGGCCCAGGCCGACCTCGCGTTCGCCGCACACGTCGCCACCCTGGACGACGAGCCGCCGGCCGAGGAGCCCTACGCGACCCGCCCCCGCCGCACCACGATGCGCCCCGGCTGGAGCAACGCCCGCCGCTACCGGTGACACCCAGGGCGGGCCGCGCTAGCATGGGCGC # Right flank : GGGACAGCACGAAGCGGCCCCCGCCTCCATCAGGAGGCGGGGGCCACTGTCGTTGGTGTTCTGCGCGTCAGGCGTCGGGGTCGCGGCGCACGAGATGGATCTGCGGGTCCGAGGACAGGTGCAGCCGCTGGAGCCAGGCGTCCACGGCGGGGATCGCCATGATGCGGGCCAGCGCCCCACCCACCGCAGCGATGCCCGCACCGACCGCCGTGATGGTCGCGACGGCGTGCTCGCCCAGCAGGTGCCCGAGCTCCTCGCCGAGGATCGCAGCCACAGCCGGAGCGACGACGCCGAGGACGATCACCGTCGAGAGGATGCCCTGCACCACGGTGCGCCAGGTGGCGCGCTGCGGGTGCGCCTGCTGAGTCGTGACAGGGGTCGCGGTCATCCGAAGGCCACCTGCTTCGTCTTGAAGGCGACCCAGGCGCCGGGGTTGCGGAACACGATGTGCGGCACCCCGGTGACGGAGTCCTGGTTGGAGTAGGTGGTGGCGAGCGGCT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:-0.53, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55733-53321 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWH01000009.1 Xylanimonas oleitrophica strain PW21 NODE_9_length_120050_cov_164.938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 55732 28 100.0 33 ............................ GGCGCAGGCAGGCCGCCTCGGCAACCGGCTCGG 55671 28 100.0 33 ............................ CTTCGCCAGCAGTGACGCCACCTGCGCCTCGTG 55610 28 100.0 33 ............................ CTCGCCGCCTGTGTGCGCCTGCGTGAGCTGCAC 55549 28 100.0 33 ............................ CCACACCGCCGTCCTCGACTGGATCGACCTGTG 55488 28 100.0 33 ............................ CGCTCAGGTGCGGGCGAGCGCCTGCGCGGCCCG 55427 28 100.0 33 ............................ CCCTCGTGGCCGTACCCACGCAGGCCACCTCGT 55366 28 100.0 33 ............................ CCAGCGGCCCGTCGCCGGGTCGACCACCTCAAG 55305 28 100.0 33 ............................ CTCGAGGCGGGGTAGAACGTCTGGTTGATCGGA 55244 28 100.0 33 ............................ GCTCGCCATGGCAGGGAGGCCAACGCGATGACC 55183 28 100.0 33 ............................ CCTCGTGGACTTCCGTCAGGTGCAGGAGTCCAC 55122 28 100.0 33 ............................ GGAGACCCACCATGGCAACGCTGACCACCGGGG 55061 28 100.0 33 ............................ GAACGGCAAGTCCACGCTCTCGGGCGGGATCGC 55000 28 100.0 33 ............................ CGAGGCGACGATGCGGGCGACCTTGATGCCGAC 54939 28 100.0 33 ............................ CACCCCGCCGTAGTCGGGGTGCTCGAGCACGCG 54878 28 100.0 33 ............................ CGGCCGGTACCAGCCGCGCAGACGCAGGTCGAT 54817 28 100.0 33 ............................ CTCGATCATGTCGACCGGCACCAGAGCGATGCG 54756 28 100.0 33 ............................ CAAGGTCAAGGCCCTGTCGGGCAAGATCGCCCA 54695 28 100.0 34 ............................ CGCAGCGAGGGCAGCCTCTGCCCTCAGCGCAGCC 54633 28 100.0 33 ............................ GTTCCCGTTCGCGGTCATGCCGCGGCGGGAGTT 54572 28 100.0 33 ............................ GGACTACAAGGCCAACAACCGCACCACTTCGCC 54511 28 100.0 33 ............................ GTGTCGGCGGCGCTCATCGGTCGCCTCCCGCTT 54450 28 100.0 33 ............................ TCCCGCACGCCCCGATGTCGCGGAAACGCTCTT 54389 28 100.0 33 ............................ CGTCGACGACCTCGAGACCAAGGCGCGCCAGGC 54328 28 100.0 33 ............................ CTTCGACAGCGGCCTGTTCGCCTGGCTCGGCGC 54267 28 100.0 33 ............................ CTGCGCGGTCCCACCGCTGTTGCGGCGGACGAG 54206 28 100.0 33 ............................ CGTGTAACGGGACGGTCGCAGGTTCAAGTCCTG 54145 28 100.0 33 ............................ CGGCGCCGCGTCGAAGATCGCTCTCGACTACGT 54084 28 100.0 33 ............................ GTGCCATGTGCGGGCGACGCGCACGCCGGGGGT 54023 28 100.0 33 ............................ CCGTGTGGTGGTGAACAACACGGAGTACGCGGG 53962 28 96.4 33 ..............G............. GTCGCACCCGTACCTGTCCCTGCTGCTGCCTCA 53901 28 100.0 33 ............................ CCCGTAGTCGCGGGGGTCCAGGGCGCCCAGATT 53840 28 100.0 33 ............................ CACGATGTCGCGGTTGAACTCGGTGACCTTCTT 53779 28 100.0 33 ............................ CGACAGCGGCCCCCGCCTCCTGATGGAGGCAGG 53718 28 100.0 33 ............................ CCTCGTCCGTCACGCCCTGGACCAGGCCGGGGT 53657 28 100.0 37 ............................ CACCCGGGTCGGCGGTCATCAGCCGTACACCGTCACG 53592 28 100.0 33 ............................ CCGGCTTGTCCCGAGGTCAACGGCTCAGGACGC 53531 27 92.9 34 .................A...-...... CGCTCTCGTGCAGTTGAGGCGGCGCGACGTCGTG 53470 28 96.4 33 ...................A........ TCCCCATATGGGCCTCTCGACCACGCTCAGGCC 53409 28 100.0 33 ............................ CGCCCGCTTGGCGGCGCGTACTGCCGTAGCGGG 53348 28 89.3 0 ......................CC..G. | ========== ====== ====== ====== ============================ ===================================== ================== 40 28 99.4 33 GTGCTCCCCGCGTAAGCGGGGGTGATCC # Left flank : CCGCCCACCGAGCCGGGCGGCGGAGCCAAGCCGGCGACCAGGCCCGAGCCCGAGGCAGGTCCCGAGCGGGAGGCGGACACCGTGCCCGAGCCGCCGGCCGAGGCGCTCGCGGACGCCGAGCGGGCGGTGCAGGAGACGGCCGACGGGGTGGACCGGCTGGAGGCCCGGCGCGACGACCTCGACCAGGCGTTCCAGGCGGCGCAGGCTCAGGTGCGGCAGCGCGAGGCCGAGGTGGGCCGTCTGGAGGAAGAGATGCAGCGTCTCCTGACGGCACGCGACGAGGCGCGCGCCGCGCTGCGGGAGGCTCAGGCGGCGCAGGAGGAGAGCCGTGCCGCGCTGGACGCCGTGGACGCCGAGCTCGACGCCGCCGAGGGGCGTGCTGCGGCCGCGCGGAGACGACGTCGGGATGCGCGCCGCACGGACACGTGACCGAGGTCGGCCGAACGCTCGGACTGAACGCGAATGGGAGATCGGCTGGGTATCGTTGCTGGTCAGGAAGT # Right flank : GAACGGGTCGAAGTCGGCTCAGGTGAAGGCCGGAGCCCTTCTTTCGAGGCTCAATCGCCTCGCGGTCGCCCCTTCGCGCGGCAAGGTGCGGCGTACATCTGCTCCCAGAGCAAAGGTCCGCGCGAACGAGGGCTCAGGGCGCACCGTGGGGGCGGCAGCAGTGCACGGGCCCCTCGTGAGTTCGAGCTCTACTACGACGTGTGAGCACAGTCTCGCGTGCCGGAGAGCAGGGGCGCATGGGTGCTCGCTGGGTGCCGCGGGGCCGGGGTGAGGGTACGAAAAAAGCCCCTGGTTGTGGACCCAGGGGCTTCGTTCGTCGCTGTCTCAACGAGTGTCCGGAGGGGGACTTGAACCCCCACGCCCGATAAAGGGCACTAGCACCTCAAGCTAGCGCGTCTGCCATTCCGCCACCCGGACAGGTGACCCGTTCCGGCGTTTCCGCCGTCTCGGTGCGGGGAAGAACATAGCACGTCACGGGGGTCGGCCTGAAATCCGCTGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38281-41362 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWH01000017.1 Xylanimonas oleitrophica strain PW21 NODE_17_length_53041_cov_188.756, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38281 29 96.6 33 ............................G CCAGCCGAGCACCGCCCCCGCACCGTCCGTGTA 38343 29 100.0 32 ............................. TGTCCAGCCGTGAACGCCTGCTCCGGGTCGTA 38404 29 100.0 32 ............................. CTCGCCGCGACACACCTGGGCGGTGAGGGCCG 38465 29 96.6 32 ............................G TTCACCCTCGCGGGCATTCCCGGGCGTCGGTG 38526 29 100.0 32 ............................. TCGTTCGAGTCCGTCGCGTCGGGGTTGTTCGT 38587 29 96.6 33 ............................T GAGCCCAGCCCCGTGCGCCCAGCCGTAGAAGGC 38649 29 100.0 32 ............................. GCGCCCGCACACCCGCTCGGCAAGGACCCGAT 38710 29 100.0 32 ............................. TCGGAGACGTCAACGTCAACCATCAGGCCACC 38771 29 100.0 32 ............................. GGGACCATCGGGACGATCTACCTGTCCCGGTC 38832 29 100.0 32 ............................. AAGGTGGAGTGGATGCCCGCCGAGCTCGCGGG 38893 29 100.0 32 ............................. GCGATCAGCTGGGCGCCGCGGGCGTACAGGCC 38954 29 96.6 32 ............................G ATCGATCCGAGCCCGCCGGCGACCACCTTGAG 39015 29 96.6 32 ............................G GCGAACGACAACGCATCCGTGACGATCGGGGG 39076 29 100.0 32 ............................. TTGGACCGCTACGCCGACGCCCTGGACCGGGA 39137 29 100.0 32 ............................. AGGTGTGCGAGCCCCTTGCGGACCTCGACCGC 39198 29 100.0 31 ............................. CCCGCTGCCCCGACCACGGCACGACGACCCC 39258 29 96.6 33 ............................G ACGAACCTCGTCGACTGGGGCAAGCGCATGGTG 39320 29 100.0 32 ............................. TGCCCGTTGGGCTCCGCACCGAGGAGCTGCCG 39381 29 100.0 32 ............................. GGGCTCCAGGCCTCCCGCAACCGCACCAAGCC 39442 29 100.0 32 ............................. GAGGCGTCGGCGGCCGCCGACGCACTCAGGGA 39503 29 96.6 32 ............................G GAGCGCGGGCACTCCACGGCGACCGTGCGCAG 39564 29 100.0 32 ............................. GTCGATGGTCGGCATCAGCGAGCCCCCTCCCG 39625 29 96.6 32 ............................G CGCTGCGCCAGGCGCGGCACCACGAGCTTCGC 39686 29 96.6 32 ............................G CGCGCGGCATCCTGCTCGCTGCTGAATGTCTC 39747 29 96.6 32 ............................G CCTGTGGACGCGCTGCTGTCCAACATCGGGGG 39808 29 96.6 32 ...........C................. TCGATCACCGTCACGTCGCAGGTGGTCGAAGG 39869 29 93.1 32 ...........C................G ACGCACACCCTCACGACGGCGGAGATGCCCGC 39930 29 96.6 33 ...........C................. CCACGAGGTACTGGGACGCTGGCCGGCGCGACA 39992 29 93.1 32 ...........C................G ACCTCACCTCGTGGCGCGAGAAGGACCCCATC 40053 29 96.6 32 ...........C................. CAGGCACCGATCGAGAAGCGGGCGGTGGGCAG 40114 29 93.1 32 ...........C................G CGGCTGGCGGACCGCCTGCGCCCTGCGCGCAC 40175 29 96.6 32 ...........C................. GGCCTCCTCAACGCCGACCTCGCCTCGACCGA 40236 29 96.6 32 ...........C................. CAGCTGCGGTCGTGGGTCTCGACGTCGACCGA 40297 29 96.6 32 ...........C................. GCCGCGCAAGACCGGCGGCGCGAGGCCCGCAA 40358 29 93.1 32 ...........C................G GGGTGCCGCCCTGTCAGGTTGGGAAGCCACCG 40419 29 89.7 32 .C.........C................G TACGTCATCTACGCCCGGCGCATCTGGACGCC 40480 29 93.1 32 ...........C................G CCTGCCGCCGGCGGCTCGATGCCCCGCGACTT 40541 29 93.1 32 ...........C................G ATCGGGTTCGCCGAGTTCGAGCAGGCCATGAC 40602 29 93.1 32 ...........C................G ACGTTGCGGCCGATCCAGTCCCACCCCGCCCT 40663 29 93.1 32 ...........C................G GCTGCGGCAGATGCGACGTCGTCGATCTGGCC 40724 29 96.6 32 ...........C................. TACAACCCCGCAACCGGCGTGGGCGACCCGTC 40785 29 93.1 32 ...........C................T TACTTCCAGGCTCGCGTGAATCCGGACGGCAC 40846 29 93.1 32 ...........C................G TCGCGCGGCCTGGTCGAGCCGGTGTGGGAGTC 40907 29 96.6 32 ...........C................. TTCTTCCAGGCGTCGCCCTCCAGGCCCTTGGC 40968 29 93.1 32 ...........C................G GTCGTCAACCTCCGAGCCGAGGAGATCGTCGG 41029 29 96.6 32 ...........C................. GTGACCAGCGCGTTCTCCAATGGCGGGCTGTC 41090 29 96.6 32 ...........C................. AGCGGGAAGGCCAGGCCGCCACGGTCGACGGC 41151 29 96.6 32 ...........C................. GGCTTGTCGACCGTCAGGAAGCGGTCCAGCAG 41212 29 100.0 31 ............................. GCGCTCGCCGCTCGATGGGTCAGTACGCAAG T [41238] 41273 29 96.6 32 ............................G GCACCTGTCTCGCACACGTCGTAGCTGATGGA 41334 29 86.2 0 .............T...CT......A... | ========== ====== ====== ====== ============================= ================================= ================== 51 29 96.6 32 GTGCTCCCCGCATGAGCGGGGATGAGCCC # Left flank : GTCCTCTCGGTGACCCCTGAGAAGCTGCGCGGAGAGCTCACCAGGTGGCTTCTCGAGATCAGCGCCGGCGTCTACGTAGGTCACCTGCCCGCCCGCGTCCGCGAGATGTTGTGGCTACGGGTCGTCGAGGACGTCGGTCGTGGGCGGGCGCTGATGGTCTGGTCGACACGAGGCGAGCAGCGCCTCGCCTTCCGCGTCCACAACCACGCATGGGCTGTGGAGGACTTCGACGGTCTTGCACTGGTGCGCCGTCAGACGGCCGAGTCCCGGGAGCTCGCCCGTCGAAGGAGCCAGCCTGCCCGTGCTGGAGACGCCACAGGCGCTGGGCTGGACGAAGAGCAGAGACGCCGTGGCGGCGCGTGGAGCTTGGCCGGGCGCCGACGGCGGTACCGCAACGCCGTCGAGCGACGCCGGGATAGTGGTCCACCCAGCGAGGAGACTCCGTCCCCGGAGTGAAGGTGGATCGCTCTGCCTGGCGGTAAAGTCCCAGGTCAAGAAGT # Right flank : CGAGCGCCCCGTGCCCGAGCCCGGGCCGTCCACGGGCTCCGCTACTGTCGGCTGGCATGGGCTCACCGATCCGCCGCGAGGTCGGCCAGGTCTTCGTCCCGGTCCGCGACATGGCTTCCGCGGTGCCGTGGTACTGCCGGCTCCTCGGGCTGCCGGTGGCGACGCCGAGCCACGAGGACACCATCTGCGACCTGCCGATGGATGACGGCCCGGGTGTCGCGCTCGACGCGAACGCTCCCTTCACGCCGGACGGACCGCCGCGGTTCTTCTGGTGGGCCGACGACCTGGCGGAGGTGGAGCGGCACCTGGTGGGGCTGGGGGTCTCCGAGACCAGCGGTGTGGTCGACATCGGGTCGGTCGCGTTCCTGCAGTTCCGGGACCCTGACGGCAACCTGCTGATGGTGTGCGAGAGGCGCGGCCCCAGAGCGTGACACCGCCGGGGCCGCGCCGACCGCGGCGGCGCCCTTACAGGTACTGCCCCGGAGACGGTCGGCCGTCCT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATGAGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCCTGAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //