Array 1 36-1043 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRNK01000191.1 Lachnospira eligens strain AF45-13BH AF45-13BH.Scaf191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================= ================== 36 30 100.0 89 .............................. CCGTAAGTTTTTATACAGCTTTAAATCTCAAAACCAAAATAGTTATTTGTCGACGATGTCCAGCTCTTCTTATATGCTCACGTATCCTC 155 30 100.0 36 .............................. GTATACGGCATTATTAGCCGCTGTTCCGTTAAATTT 221 30 100.0 35 .............................. CACTTAAAGACAGTTTCATGCAGTATTACATCGAC 286 30 100.0 35 .............................. ACCCACATCAGGACACCGCCGTACCATTTACCTTC 351 30 100.0 36 .............................. GATTTTTAACGGATTGCACAATTCGCCTAAATTAAA 417 30 100.0 36 .............................. AGAGATTCCTATAGAGATAGGATTGAAACTGCCAAG 483 30 100.0 36 .............................. AAAAGCGTCGTAAACGAGCGCCGCTTGGTCTAACTT 549 30 100.0 34 .............................. TCAACAGCGTCAACCCATGTTTCTTTTCAAACCA 613 30 100.0 36 .............................. AGTATCAGCATTTGCGGAATTATCTTTCAAGTCTGT 679 30 100.0 36 .............................. ATTTAATGCTGCACAAGTATCTTTATACTCATGCAT 745 30 100.0 39 .............................. CGATTGCGGTTACTCCATTACTTCCGTTAAATTACTATA 814 30 100.0 39 .............................. AATCTTCCACTTGTCGATATCTATTACAAGTGCATCCTC C [828] 884 30 100.0 34 .............................. TATTGCATTATACACACAAAGGAGAACCACACCA 948 30 100.0 36 .............................. TGAAGTCATCTGGAGGAAAACAGACACTTTATATAA 1014 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================================================================= ================== 15 30 100.0 40 ATTTACATCCCACTATGTAACTATTAATTC # Left flank : ATTGATAATCCGATACAAGCAGATATTACAATAAAA # Right flank : CACTTAAAGACAGTTTCATGCAGTATTACATCGACATTTACATC # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATCCCACTATGTAACTATTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1369-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRNK01000090.1 Lachnospira eligens strain AF45-13BH AF45-13BH.Scaf90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1368 30 100.0 38 .............................. GTAACACAGAACGATGCGACAGCATACGCAGCAGGCAC 1300 30 100.0 35 .............................. ATGCAGACTACTGGAAAGCTGGCTCAACAGACAGT 1235 30 100.0 34 .............................. GAATACGCTAATAAGTTAATAAATATTATTAATG 1171 30 100.0 34 .............................. AAGTACTCCAAACCGGCATATAAAACCCCTCCAA 1107 30 100.0 37 .............................. GAGAAGAAGAAAATGATAAGGCTTTAACGGAATCATG 1040 30 96.7 34 .........................G.... AAAGATGATAGTGAGATTGTAATACCTCTTACTA 976 30 100.0 35 .............................. GAAGAGAGCCGTAAAGAATACTAACGCTGCTTTAT 911 30 100.0 35 .............................. GCACAAATAGCACACAGATATTATCCTGTATCAAA 846 30 100.0 37 .............................. CACGCAACAGATATCAGCTATTATTAACGCTTCTATT 779 30 100.0 35 .............................. TGCGGAACGGACAAGAGCGTTGTAGTTCCAGGACG 714 30 100.0 36 .............................. ATATGATGCTTATACATAATCATCCAAGCGGATATC 648 30 100.0 34 .............................. CCTGTAGCAATCGCCCCACCTACAGCCGCAACAG 584 30 100.0 37 .............................. AATTATGCGGCGCATATTATTAGTATTATGTACGACT 517 30 100.0 35 .............................. AGAATCTGTCAGAATGGGAGCCTCCGGCAAGGGGA 452 30 100.0 35 .............................. TTATTATAATCCTCTTCATAATCAAAAGATTTACG 387 30 100.0 34 .............................. TTTCCCCACTGCGGACCATTGTTTCAATTGCTGC 323 30 96.7 36 ......T....................... AACATTATTAACGGATTTAATTCGTCTGCTATTTCT 257 30 100.0 35 .............................. TTGTTTGTTAGCGCGATCCTGATGAATCGTGTGCG 192 30 96.7 36 ..........T................... TTAGTTACAATTCGGAAGATTTCCTTAAGGGGAAAT 126 30 96.7 35 ..........T................... ATTAGAATATCACATAAAAGAAATGAAAAAATATG 61 30 96.7 0 ..........T................... | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.2 35 GAATTAATAGATACATAGTGGGATGTAAAT # Left flank : AAAGCATTTAATAGGTGAGAAAGAATATGAAGGGTTTAGAATATGGTGGTAGTATATGTATATTGTACTTGTATATGATGTTAGTAAAGATGAAAATGGGCAAAAAAGATGGTCACATATTTTCAAAATCTGCAAAAAGTATCTGACGCATATTCAGAATTCTGTCTTTGAAGGAGAAATATCAACAGTTCAATTAGAAAAATTACGGGGTGAGTTGAAACCACATGTTAATACTAAGCTGGATTCAGTCATTTTATTCAAAAGCAGGAGTGAAAAATGGCTGGATAAAGAATTTTGGGGTAAGGAAGATGATTTGACGAGTTTCATAATTTGATTGTCGACCAAAAATAGTGTAAAATATGCACAGAGTCGACAATGGTGATATTGCTATGCTTCTGGCATATTCAGGGCATAAAGTATTAGTAATCTGTTGGCGGATTTAAAGGGTAGACAGAATAACGCTTCTGAGTTGAGAAACAGAGAGACTTTAATGATTACGG # Right flank : TATATCAACAATAAGCTACAATTCAGAAGAGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAATAGATACATAGTGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 2642-2431 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRNK01000153.1 Lachnospira eligens strain AF45-13BH AF45-13BH.Scaf153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 2641 24 100.0 39 ........................ ATGCTTTCCCACTGCTTTAACGTCCAATCCTCCGCTCTT 2578 24 100.0 38 ........................ CGTGCCTCACTCCGCTTTAAAGTCCAATCTCGCATGAC 2516 24 91.7 38 .......A.C.............. GTGCCTTCTCACCGCTTCAACGTCCAATCCGGCGCACT 2454 24 95.8 0 ...A.................... | ========== ====== ====== ====== ======================== ======================================= ================== 4 24 96.9 39 TTGGCTTCCTTTTTGGACTTCATC # Left flank : ACTTCATCATGCTTTCCCACTGCTTTAACGTCCAATCCTCCGCTCT # Right flank : CGTGCCTCACTCCGCTTTAAAGTCCAATCTGACTCTCTTACTCGTTCCTTTATGTCAGAACTGACCGCCACCGACAAAGTGCAATATTTCAATCACGTCTCCGTCTTCAATACTTACTTTATCAAAATCTTCCCTATGAATTATTTCCATATTCTTCTCAATTACAATACCTACCGGGTCATACCCAGCTTCTGTTACATAAGCAAGAAGTGTCTTTCCTGCAACTAGTGCAACATCCTGTTGTTCTCCATTAATCTGTACCATTGTGCCTCCTTTCCTTCTCTCCGCCATTCTTTGCGTTTGAATCTGTGCAAGCACATTTCAGCTTACATGGCTTCTCTTCGCCTTTTTGCGCGAGTAGCTCACACTCCAGAACCTCGTTCTGTCGTTGTCGCGGTGCTCCTCGAGAGCCCATATAAATTTCACAGTTCGTGCAAGCACGACTGTGAAATTTCCATGTCTTCTCTCATCGCTACTCGCGCAAAAAGGCAGAGCCGCTT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGGCTTCCTTTTTGGACTTCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //