Array 1 623-2770 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAJE01000030.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22794, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 623 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 689 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 755 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 821 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 887 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 953 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 1019 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1085 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1151 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1217 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1283 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1349 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1415 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1481 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1547 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1613 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 1679 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG 1745 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 1811 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 1877 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 1943 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 2009 36 100.0 30 .................................... AGCCAGATTTCGGAAAACCCTGCGGGCTTT 2075 36 100.0 30 .................................... GACATCAAACTGGGTATAGCGGTTGTGGCT 2141 36 100.0 30 .................................... ACGCCGAACTCGTCCTTCACGCGGCGGACA 2207 36 100.0 30 .................................... AAATGCGTGTGGGTGTGGTCGTCGATTTGT 2273 36 100.0 30 .................................... AAATTTGAAAATTTCTATATTTTGGTTGTG 2339 36 100.0 30 .................................... AAACCAAAAAACGCATCTTCCTGATGGCGC 2405 36 100.0 30 .................................... ACAAAAATCAGAACAGGCGACGAAGCCGCA 2471 36 100.0 30 .................................... TCTGGACAGCGAGTTTTCCTTTGAGTTTTA 2537 36 100.0 30 .................................... AAACCGAACCCGAATCCGCATAAAAAATAC 2603 36 100.0 30 .................................... GCCTTGCGGCTTCGGCATTGCTGGACACGG 2669 36 100.0 30 .................................... TCAGCGTGTTCGCGCGTGAGCTTGCGGTAG 2735 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //