Array 1 23885-24493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRE01000014.1 Leptospira noguchii strain 56271 Contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 23885 37 94.6 35 .................CA.................. GATTTGGAGAATACTGCACAGATGCGGGTTTTGCG 23957 37 94.6 34 .................CA.................. ACGTTAGTTATCTCTCAGCCTTACCGGTTGAGAA 24028 37 100.0 35 ..................................... TTTGTGAAAATTCAATGGTCGTTACTTTCATGCTT 24100 37 97.3 35 .................C................... TCCGTTCTTCTTTTTGCTATTCTACTAAAATTCAT 24172 37 97.3 36 .................C................... TAATATTATTATTAATTCATAATTTGTCATATTAGT 24245 37 100.0 33 ..................................... ATTTTCTCATAGATCTCAGTAACGAGGTCTAAC 24315 37 100.0 35 ..................................... TAGTGTTACAAATGCACTTAACGCGCTTGAGAGCT 24387 37 94.6 33 .................CA.................. CGGGGTAAACACTTAAGGGATTTCGAAACCGAT 24457 37 94.6 0 ......................T............T. | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 97.0 35 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : TAAGCCATAATTTCTGAAATACACAATCGATTAGAGCTTTTATATTTTTACAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCGCCAAAATTCTGAACGCTCTGATTCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGCAATCATCTCAACAAGAATGAAAAGATACTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTCACACAAACTTAACAATTCGAAATTCAATTTTCTTGACTTTAAACAGTAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGTATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAAAAAAGTTAATAAAGCTTTTTCTAATACATCGATTAGGACCTTTATAGCCGCTG # Right flank : CATTTAAAACATCTTCGAAAAACGTTAAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAACCACCGTAAAGCATCCAGAAGCCACGTAAAAGGCGGTGAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTCGGAAAGTATTACACAGAGAAGATGGAAGACCGGGCTTACAAATACAATTGTTAGTTATACTTCACTACTTAGAAAACGCGTATAACGTGTCTGATGAGAAGGTTATTTAGAAAATCAGTATTGGCAACATTTCAAGTGACTAGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTCT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTCCTTTGTTTGCAAAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 12953-12700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRE01000224.1 Leptospira noguchii strain 56271 Contig224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 12952 37 100.0 36 ..................................... AAAAAATGTTGTGTCTGATTCTTCGATAAGTAACTG 12879 37 100.0 35 ..................................... TCGATTAACGAATATGGAGAGAGAGACAACTCTTC 12807 37 100.0 34 ..................................... TTTGTGGTCTTGCCATCGCGTTTTTTCTGTCGTT 12736 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 35 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : AAAGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGGACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTCATAGTTCAGATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACTGGGAAAAGTAATTTTCAATAAATCTAATGTTTTTAAAATATTAGATTTTACAACAAACCTAATTTCAAAATTAGCAAGCAAACGTTCCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATGTTCTACTTTTTTAATCTATATTATTGACCCCGGAAAGACGATTATTTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : GATTACTTATATAGTTTCCTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATCGCATTCTTACTGTTCAATTCAGCGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTCTGGTTTCATTTTCACCGGTTTTTGGATGTTTTTCGGTGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAAGTAAAATTGAACTTCTTTTTTAGAAAAGAGTAAATTGAAACCTCAATCGTCAGAATCCAATTAGATTTCATGTTTGAAATTCTCTAAAAGTCTGTCTCAAGCCTAAAATGATCAAGATTTGATCATGGAAATTTCACAAACGCCAGATGTGGCGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 13374-10475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRE01000288.1 Leptospira noguchii strain 56271 Contig288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13373 29 96.6 32 ............................C GGGGAGTGTAGGGACCGAATCATTCGATACAT 13312 29 100.0 32 ............................. GCGCCTCCTTTTGGGGAGAGCGCCTTATTTTT 13251 29 100.0 32 ............................. GCCCTCTAATCAGAGGGCCATAGGAAATAAAA 13190 29 100.0 32 ............................. AGAGCAACTCGAAAAAAGATACAAGAGCCTTT 13129 29 100.0 32 ............................. AAAACATTAAACGTAAACGATCCGCAAAAAAA 13068 29 100.0 32 ............................. TAGCGTTCCATACGGTAATTATAATTTTTTAG 13007 29 100.0 32 ............................. GGGGCGGTATGAATACCTTGAGAAAAATCGGA 12946 29 100.0 33 ............................. GCAAAAAATCTAATATAATAGGCCAGGCGATTG 12884 29 100.0 33 ............................. TCCCCACATTAGAAGATCTCACTGGCACCATTA 12822 29 100.0 32 ............................. GGCATGAGAGAGACAGGCCTACTCAGTTTGGC 12761 29 100.0 32 ............................. CAAGGTTTCTGGCGTTATCGACTTATTCGCGT 12700 29 100.0 32 ............................. AGGCCTGTTTGGTGTTGACGTTTTTTGCTTTC 12639 29 100.0 32 ............................. ATATACCATGAGAGTTTCCCTTGTTGTGCCGT 12578 29 100.0 32 ............................. ACGAGGCCTTAAAAATTCTTAGGACATCGATC 12517 29 100.0 32 ............................. CATTTTTGATCCCGAATACAAAATGGGTAGTG 12456 29 100.0 32 ............................. GATCTGCAATCATATTACCGAGACTAAAATTA 12395 29 96.6 32 ............................A AAACTGGTTTATTAAGTTTGGCGCCGGCCGCC 12334 29 100.0 32 ............................. AGTGTAGTCCTCTAAATGTTTTTTGCGTGGCC 12273 29 96.6 32 ............................A AAACTGGTTTATTAAGTTTGGCGCCGGCCGCC 12212 29 100.0 32 ............................. ATAGTACTCTCTTCTAAACTTTTCGCCATAAA 12151 29 100.0 32 ............................. TCGTCTTTTGCAATGTCGATTCTCGAAAATTT 12090 29 100.0 32 ............................. GATTGACTTTACGGCATTTACTAACGAGGCGA 12029 29 100.0 31 ............................. GACAATGGTTTTATCGGTGGTGTTGGATTAG 11969 29 100.0 32 ............................. GGTTTGCGTGGTGAGAGTTACACCGTAAACAC 11908 29 100.0 32 ............................. CCGGATGAATACTACAATACCATGGTCGATAA 11847 29 100.0 33 ............................. TCACACTTGATCAGTTTCTATCCGCATTTGACG 11785 29 100.0 32 ............................. GGCATGAATAGATCAATTAAATCCATTTTTTG 11724 29 100.0 32 ............................. GAGACGGGCCTACTCAGTTTGGCGCCAGCTGC 11663 29 100.0 32 ............................. GAATGAGAGAAACCGGTTTATTGAGTTTGGCG 11602 29 100.0 32 ............................. TTACCCAGCAGAGCAGATTCCAACGTTAGGAG 11541 29 100.0 32 ............................. GGTCGTTTCACGGGCCAAACTATTCCAGATTT 11480 29 100.0 32 ............................. CGCTAAACAGGCCAACGATAGTGATAAACCTA 11419 29 100.0 32 ............................. AATTAGTAGATAGAGTCAATAATTTATCAGAC 11358 29 100.0 32 ............................. AGTCTGAAAAACATCCTGATTATGTGATTATG 11297 29 100.0 32 ............................. GATTAAATAAATCCGTATCAGGCGTTTCTCGC 11236 29 100.0 32 ............................. CTAATATGCTCATAACTATGTATTATGGGCAG 11175 29 100.0 32 ............................. GGACATGGATACGTGTCGAATTCGAATTCAAA 11114 29 100.0 32 ............................. GGTATTCGGAATAACTTCTCGGAGCCTTCTCG 11053 29 100.0 32 ............................. ACGATTACGATGGGCTTTTGAATATTACAAAT 10992 29 100.0 32 ............................. TAAAGTCAGCAATATTACAGTTAAAGACCAGA 10931 29 100.0 32 ............................. TTTCCGGCGCGTTCGAGAAATACCGTGCTGTT 10870 29 100.0 32 ............................. TCGTAATGATTTTCGAGGAAAGCCAAAACCTA 10809 29 100.0 32 ............................. TTAATCATTGGGAGAAGGGATTCTTGGAATAA 10748 29 100.0 32 ............................. TAGCACCGTAAGTCATAATGCCTCCGATATAA 10687 29 100.0 32 ............................. CATTTAAAGAATCTACTCCATCTTTAGGAGAA 10626 29 100.0 32 ............................. TAACCCGTTATTCGGACAATAAACGTCGATGG 10565 29 100.0 33 ............................. TCTACTAGCGCCGCACGCTTAATAAGGTCTTTG 10503 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.6 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTATATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATTAGATCTACTATACAAATTCTTAGA # Right flank : AGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAGCTTGGCCTTTACTTTGCTGATCCGGCAAACCACTGATTGCTTGTCTTTCCTTGCACAACATATATACTACGATAGAGAGTTTGTCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAAGCCAGAACTGTCCTCAAGACTTTCGTAACTAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTACGACTCGTGTGAAGCGAAGGCGAAACACGAAGTCGTGGGCGTGAAAAAACAAAAAAGCCAGAACTGTCCTCAAGGCTTTCGTAACTAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTGCGAATGGTTCGTCATCCCGGTCCGGAAAGGGGGGCGTTTCCCAGCCCTTACCGGGCTGGGCTCTCCGCTCGATCCCGAACGCGACGATCCATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3108-3499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRE01000460.1 Leptospira noguchii strain 56271 Contig460, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 3108 37 100.0 35 ..................................... ATTTGACCAACTGCGCCATCCCGTCGGGCCAGAAT 3180 37 100.0 33 ..................................... ATAAGTACAGGAACCCGAGAACGACCATTGTTT 3250 37 97.3 35 ....................................T TTACAAAGAAAAAGCTATCTTTGAATATCTTCTTA 3322 37 100.0 34 ..................................... ATAAGATCCTTTTTCCTCTATCGCGATTAGATCC 3393 37 100.0 33 ..................................... ACTTCGATGCCTCTCTTTGATTTACGAGGTGAT 3463 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 99.5 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : AGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAACGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTTAATTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTCCCCATTGCAAAAATGAAGCGGTTTTTTGGTTTCCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAGCACTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATATATAAATTAGTATCTTTGTGGCCGCT # Right flank : CAAGAACTCTACAGGAAATATTAAGATGAGCAAAGAATTTCTTTCTCTTATCAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGTAAAAAAGTATGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTGATATATTCTATAAATTAAATATACAAATCTATCGTTAAACTTTATAGTAAAATGCAATTATGAGACGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCAGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTCAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCAAATAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 1118-1510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRE01000519.1 Leptospira noguchii strain 56271 Contig519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1118 37 97.3 34 .......................A............. GTCTGTTGGGCCTAAATGCACTCTATCGCCAATT 1189 37 100.0 33 ..................................... AGATCCGCATCCCAAATTGTTTGAGTGGTGTGG 1259 37 94.6 35 .......C..................C.......... AGAACCGCTGTGGTTCTCAACGTTTGGTTATAGAA 1331 37 97.3 35 ..........................C.......... AGAACCGCTGTGGTTCTCAACGTTTGGTTATAGAA 1403 37 100.0 34 ..................................... GATTGATTCGGGTATCGTATCATTTAATGGTTTA 1474 37 97.3 0 .......C............................. | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 97.8 34 GTTTCTTTCTCTTGTTTGAGAGGGAGTGGATTGAAAC # Left flank : GTTTATAGAGAATTTTACTAGGTTGTTTCAAAGCTAAAAACTTTGCGAATGTTCACCGACGAGTCACTGTTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCTAAATCTCTAAAATTCGTAAGACCTAAAAAATATTTTTTTTAATTTTAATTTGAGACTGCTTCTAAAAAATCCTTTTGCTTCTTTTCAAAAAATTTCAGTTAGGTGAGAACTTTAACTTCATTTATAGCTTAAATCTATCTTTCCTGGACTTCCTTGTTATAGGTTCGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGCT # Right flank : CATTCGTTACGTCTGCAAAAAGGAGATTCGTAAAATGTTTCTTTCTCTTGTTTGAAGGCTACATAATAGAAGTGTCTAAAATTCCATTCCTGAAACTGGATTCCTTTCAAAATTTATAATACTCTAATATATAGGATAAATAGTATTCTAGTGAATTGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCCACAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTACGACTGATTTCCATTGAACAAAAGTTAGTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTGTATTTTTACAGACTGAAGCCTCTCTTTCGGAGAATGACTTAGAACTTGTCTCAAAACCGTCCAATATGGGAACTATTACGAAAATGGAACGACATTAGAATTGTTTGAAAGTTCGCAAATTGCTAAATGCGATTTAATTTATAGGAATTACTATACTTTATTAAATATTTCTAAAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTGTTTGAGAGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 25845-26315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRE01000008.1 Leptospira noguchii strain 56271 Contig008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 25845 37 100.0 36 ..................................... TAATTCTTTGTCCTCTCTGTAGATTTTGCGGATCTC 25918 37 100.0 36 ..................................... TTTCCAGTTTTTCAACGGATCGTCAATGATTCCGAT 25991 37 100.0 34 ..................................... CTTGCCATACGAATCCATTGACGCGTTTTAGTAT 26062 37 100.0 35 ..................................... TATTTCATCTGAATCATAAGAGTAGTCTTTTTCCT 26134 37 100.0 36 ..................................... TGTAAATACTTTGTTTTACGACATGCTCTTGAAATT 26207 37 100.0 35 ..................................... TTATATTGATTGTAAAATTCCGCAAGGGAATCCGC 26279 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 100.0 36 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGATAAACCTAAATTTTGTAATAGTTCCCACATTTAAATACTACAGATTCAAGTATTATAAAATTCTATTTTTTATTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCGAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGTACATACAGACTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : CAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATACGATGTAATCAATGTAAAAACAATTGAGGCGAGAAACTTAGTGTTTCATAGATAGGCCTTTGTTTAGATCACGCTCTAAACTCAAATCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTGAATTTCAAATGAAAGTATGGAATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAATTTTTAGATACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATCATTTTTCCTCCATCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 956-347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRE01000095.1 Leptospira noguchii strain 56271 Contig095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 955 37 100.0 34 ..................................... TCTGTCTCCATGACGAGCGCATCTTGAATACTCT 884 37 100.0 36 ..................................... AATGTCTTACGCAAACAAAGAATTTATAATTTCCGA 811 37 100.0 35 ..................................... TTTTAATTGCTCAAAATGAATAGGAATGACTTTAT 739 37 100.0 35 ..................................... TGAGACGTATAAACTTTGTTTCGAAAAATATCTTC 667 35 86.5 36 .......A...A....A....--.............. ATCACAAATGTAAACTCAGATTTACATTTGACTAAA 596 37 100.0 33 ..................................... AAAGTTATTGGACGGCGCGGCTCACGTTAAACA 526 37 100.0 35 ..................................... GATTATTGCAAGGCTGCTATTCCGGATCTGGAAAA 454 37 100.0 34 ..................................... TATTATTGAATCTGAAAAAGATTTTATAGAATTA 383 37 94.6 0 ...........G....A.................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 97.9 35 GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Left flank : GAAGCGAGACGCTGAGTTCAGGAGGGGTTTGCTTTAGTTTCATAAAATGTGGGGACTAACTACAAAAATTGAACTAGATTAGTACTGCTTGAAAGTTCCCAAAGTATCAAATGAGACAAAATATGTGGGAACTACTATAGTTTATTAATATTTTCTAAAGAATGACCGCGTAAAATTCTTTGGGTTTTGGGACAGGCTCTAAACTTTTAAATCAATCCTCTGAAAATTCATCTATAGACATCCAGTTACTTAGTAGTAGTTTATAGTTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATAAAGCGCTTTTTGCGAACCTGTTTCTCCCGATTCATTGTGGCCCATTCGCGCTCAAGCGAATAACCCCCGTTTGTCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGTCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : CTTTGAGATGAGTTTCATTTAAAATTTCCAGAATTTATCTGTAAAAATCATGGCTTACTTTAAACCTCTGTATTCAAAATCCTGAAATTATATTTTAGAAAATCAATATATAATTGATTACAAACTATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGATTATTTTCGAGATAACTTTTACCGATCCCTACAAAATCAAGTACCTAAAGTTATGATAAAGTGTCGGTTAACGTGTTTGGACTTCCCCCGAAGAAACGGACATTGCTATGCAGTAATTTTTTCTCGAAACTCGACAGGTGTAAGATAGCCTAAAGCCGAGTGTCTTCTCTTTCTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //