Array 1 1871812-1871111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMR010000001.1 Streptomyces nodosus strain DSM 40109 Ga0111588_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1871811 30 96.7 31 .............................C CAGCCAGTGCTTGAGGACGGGGGCGGTGCGC 1871750 30 96.7 31 .............................A AGGGGGAGATCTGGCTGGTCGGCCACGGCCG 1871689 30 96.7 31 .............................T CCTCCACGTGAGTCTTCGGGATGACCAGCGT 1871628 30 100.0 31 .............................. TGTACAGCCCCGGCAGCAACTCCGGACGCCC 1871567 30 96.7 31 .............................T CTTCGACGTCAAAGAGTCGGTCGATGAGGCA 1871506 30 100.0 31 .............................. TCCGTCATCACCTGCCGTAGTTCCCGGGCGG 1871445 30 96.7 31 .............................C CACAGACGCGCGCGGGTGAGGCAGCGAAAGA 1871384 30 96.7 31 .............................A ACTGGGCCGTCGTCGCCCGCATGGCACAGGG 1871323 30 96.7 31 .............................C AGGTGGCGGCATGAGCGCCCGCCCGCACGGT 1871262 30 100.0 31 .............................. AGGTGCGGGCGCCCGTCCGCGTGCAGGAGCT 1871201 30 96.7 31 .............................T TCTGCCGGGCTATCAGCGCGGTCGCGAAGAG 1871140 30 90.0 0 ........A.................TT.. | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.0 31 GTCCTCTCCGCGCGAGCGGAGGTGAACCGG # Left flank : ACACGTACGCGGGCTCGTCGCGCACCGCGTCGAACAGTTTGGGAATCTGAGCCTGGAATGCCGGTGTGATTTTTCCCAAGTCATGCAGCCCCGCCCAGAGGGACAAGACCGACCGGCAATCTTCCCCGTGCAGACCCAGCTGCTTGGCGAAACGCAGACGCGTCCGCTCGCCCAGCAACTCGTCCCATAGCGTCGTGAACGCCGCTGCCACATCCAGCAGGTGACACATCACTGGGTAGGGCTGGCTCAGCCCATGCTCCTTCCCCCACAGCCGAGGGTCAGGGCACGCGGGGACCGAGGGCACGCCTTGAGCTTCCGTCATGCACCCACTTGCTATCAGCAGCCACTGACAATGCCCCTGAACAGCAAGAACACCAACCGAATCGCAAGCGGGCGCCTTACACTGACCGCAAGAGCTAACCACCCGGGAAGTGTTGATGCCTGCCGTTGGCACGAGTAAAGAATTGGCAATGCCCCTATAGCAGTGCAGGTCGCAAAGG # Right flank : TGACGGTCTGGAAGCGCGAAGTGGATCAGCCTCGGAGTCTGGCGGAGTCTGTGCTGGTGGGGTGAGTTTTCAGGGCCTCGACGAAGGTGGTGAAAGCTCTGGTCGGGAAGGAGAGGGTTGCCTTGGCCAGAGCCTTGGAGTCGCGTATGGATACGTGGGTGGGTGACTTGGCGATCTCCACACAGTCGTTGCCGTCGCCGGGGCCCGAGTAGGAGGACTTTCGCCAGTTGCTGGGGGTGGCCATGGTCATGACGCCTCATAATTCCTTCGCCAGCCTGTGGATGAAGTCACGGGACTGGTCGGGTGGGAGCGATACGGCTTCCACTTTACGGAAGAGCGTTCGAAAGGCGTCCAGTTGATCCTCTGAGTCGATGAACGCGGTGCCGTGGGGTGCGTCTCGAACCACCGTGTCGAGCCTGGGCATCGCGCCGCCCGCGTATTTCATCGTGCTGGTGGCTCCGGCGAAGCCGTCCAGATCGAAGGGGATGACGCGCAGGGTG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1881546-1882550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMR010000001.1 Streptomyces nodosus strain DSM 40109 Ga0111588_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1881546 29 100.0 32 ............................. TCTTCGACGTGAAAGAGTCCGTCGACGACGCT 1881607 29 100.0 32 ............................. GTCCCGGAGGTGGTCCTGTCACCGTCCGCGAA 1881668 29 100.0 32 ............................. TCGGTGAAAAGTACAGCTGTCATCGCGTGCCA 1881729 29 100.0 32 ............................. ACCGCGTGACTGCTCCCGTTCGGGTGGGCCCG 1881790 29 100.0 32 ............................. TAATCGGAGCAGAACATGCCCTACATCACCGT 1881851 29 100.0 32 ............................. CAGGCCCCCAGGTTGCTGCGGGTGATGCGCAA 1881912 29 100.0 32 ............................. TACAGGTCGAAAGCGAGCCTGCGGAGGTCGGT 1881973 29 100.0 32 ............................. CGTTCATCACCGCCGCCCGGCAGGCGCAGCAG 1882034 29 100.0 32 ............................. ACGTCGCCACCACCGTAGACGGCCCCGGCCCG 1882095 29 100.0 32 ............................. GCACTCCGAGACCAGGCAAAGGCAGCCGAGCG 1882156 29 100.0 32 ............................. TTTCTCGGGTCCGAAGTCGTCGGGCGTCTCGA 1882217 29 100.0 32 ............................. GACACTTCGCCCCCGCCTCCGCCGAGAGGTTC 1882278 29 100.0 32 ............................. GGAGTACCGATACGGTCAGCGCTCGCACAGGC 1882339 29 96.6 32 ...............A............. GTGTCCGACGCCGTGATCGGGGTGCTGTTCGG 1882400 29 100.0 32 ............................. ATCACTGCGAGGCACCCGCCGAGGTCCCGGAG 1882461 29 100.0 32 ............................. TCCACGTCAGTCTCCAGTCGTTGGGGGCTGGT 1882522 29 93.1 0 ..........................CA. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTCCTCTCCGCGCGAGCGGAGGTGAGTCG # Left flank : ACGCATCGTCCACGACCTCCAGGATCTGCTCGACCCCAGCGGCGACAGAGAGGTCCCCGATCCCGAGGAACAACTGGTCGACCTGTGGGACCCGGTAGCCGGGTCTCTCCCCGGCGGGGCCAACCATGGAACCGGATCATGAGCCCCGCCCAAGGGGAGGTACAGCCGCCGTGGCCTCGATGATCGTCCTCGCAGCCTCCGCCGTCCCCGACCACCTACGCGGTGCCCTCACCCGCTGGCTCCTCGAAGTCACACCCGAGCTGTACATCGGCACGGTCTCCGCTCGCGTTCGCGACGAACTCTGGGAATCCGTCACCGCCTGCGCCGACAGCGGCACCGCCGTTCTGGCCTATCCCAGCGACAACGAACAGGGCTTCGAACTTCGCACTGCCGGCGACCAACGCCGCGTCCCGGTCGATTTCGACGGACTGACACTCGTATCATTCACACGAGATAGCAAAGAGATGGCAAACCTGCTTTAGCCCTGCAGGTCACAAAGG # Right flank : GGCGGTCACGATGTCGAGATCACCGATGGCGTGAACCGGCCCTCACCCCGTTGGACGGGCAGGGGCTGTGGGTCTCGGGGCCCCGAAAGGGCCCCAGCAGGTTGTCAGCCGACCACCCGCCCATTCAGCACCACCCGTCGCGGGGCCGCCAGGACGCGTACGTCGGTGCGGGGGTCCTCGTCGTAGACCACGAGGTCGGCCGGGGCGCCCTCCTCCAGGCCGGGGCGGCCCAGCCAGCGGTGGGCGGACCAGGTGGTCGCCGAGAGGGCCTGGAGGGGCGGGATGCCGGCCGTCACCAGTTCCTCGACCTCAGCCGCCACCAGGCCGTGAGGGAGCGAGCCCCCGGCGTCCGTCCCCACATACACCGGGATCCCGGCGTCATAGGCGGCGCGCACGGTGTCGTAGCGGCCTTCGTGGAGTCGTCGCATATGGGCCGACCAGCGCGGGAACTTGGTCTCGCCGCCGTCCGCGAGGCGGGGGAAGGTCGCGATGTTGACCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //