Array 1 13138-17000 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBER01000002.1 Lacticaseibacillus thailandensis DSM 22698 = JCM 13996, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13138 28 100.0 33 ............................ CCGACGTGACAGCCGACTTGGTGAGGTCAACCC 13199 28 100.0 32 ............................ CCTAAGCGCTACGCGTTGGCAACCGGGCAAGG 13259 28 100.0 33 ............................ CTACCACATTCAACCTCTGTCTTGGTTCGTGTG 13320 28 100.0 33 ............................ TTTTGCAAAGTGCCAACAAGCAGTATGTTTCCG 13381 28 100.0 33 ............................ CCAACCAGTGACACACGTCCACCGGCATAGTCA 13442 28 100.0 33 ............................ TCGAAATGGCCCCGAGCACCAATCCCTTTTTGT 13503 28 100.0 33 ............................ TGGACGACTGTTGGTCGCCTTGGCCATTTAAAA 13564 28 100.0 33 ............................ TTTTGGTGATGGTCGCTGCCAGACCGGTGATGT 13625 28 100.0 33 ............................ TTTAGAGAAGCACGAGCTAGTCAACTATTTGAT 13686 28 100.0 33 ............................ CCCCAAAGGGGATGGCCAGTATCAGCACGCTAA 13747 28 100.0 33 ............................ TATAACACCCTACCGACCAGCAGACAACACTTT 13808 28 100.0 33 ............................ TTTACATGTTCCCCGCATAAGCCGGGTTTTTGT 13869 28 100.0 33 ............................ TCAAGGCCCTACAGGCACAGGTCAAAAGTCTGG 13930 28 100.0 33 ............................ TGCTGATTATTGGATTAAGTTGTACAGCGCCGG 13991 28 100.0 33 ............................ TGTGCCGGGTCGCCTTGGTGACCGTCACCATCT 14052 28 100.0 33 ............................ CAGGTCATAAAAGTACCCCACGAGGTCGCCCAT 14113 28 100.0 33 ............................ TGATGCTAGGTGGTGCCCATGGTGGATTTAGTG 14174 28 100.0 33 ............................ TTAAGCCTCGTTATCAATTAAATCTTGCGTGAA 14235 28 100.0 33 ............................ CGCTCGTCCGGCTAAGTCCAGCGAACTCCACCG 14296 28 100.0 33 ............................ CCGCTCAAACACAGCTAAAAGCAGTCGAGTGGA 14357 28 100.0 33 ............................ TACCAGTAGTGAATATCGTTGTCGCCGCTGTAA 14418 28 100.0 33 ............................ CGACCGTGTTACGCTCATCGGCCATGCCAAACT 14479 28 100.0 31 ............................ CATTACCGCACACAACGCTGAACTTGCGGAT 14538 28 100.0 33 ............................ TTTGCTAAATGGTTCTTGGCCGTGGCAGTGGTT 14599 28 100.0 33 ............................ CTGAAACCGAAGTCACCCTAGCAAGTATTACGG 14660 28 100.0 33 ............................ CTACGTACTCAACGCCATCTACTAATACAAGTT 14721 28 100.0 30 ............................ TCGGTCATGTTATACACCGCCTTTCAGCAA 14779 28 100.0 32 ............................ ACCCCAGCGCTTTTGTTCACGTGAAGGTCGAT 14839 28 100.0 33 ............................ TGTTATATGCACTGGCCGCGTCGTCCCGCGCCT 14900 28 100.0 33 ............................ CGAAGCACTCGGATCGTTTAAGTAGAAATCGGA 14961 28 100.0 33 ............................ TGTCTGGTAAATACATTAAGGACAAACGTCCCA 15022 28 100.0 33 ............................ CGACGACAGCATCGACTTGGACGAACACCCAGA 15083 28 100.0 33 ............................ CTAACGGAGACGCAGAAGACGTACGCCATCAAG 15144 28 100.0 33 ............................ TTGTTGTGCCCAATAATCTTAAAGCTGTGCTCA 15205 28 100.0 33 ............................ CACTGAACGCGGCTTTGAAAAGCATGTTTGGTA 15266 28 100.0 33 ............................ CGACGAACGCCCACGAACCGAAATGCCGTTAAA 15327 28 100.0 33 ............................ TGGCGATTTTGACGTCGTGTGCAGCTCGCTGTA 15388 28 100.0 33 ............................ CTGCGTCAATGCAGTGGTTGTAACTGTCGACTG 15449 28 100.0 33 ............................ CACCGGCTGGCCCTGAGCCTCATCAACAATATT 15510 28 100.0 33 ............................ ACAGATCATCGTCTTCGGTGTCGTCTTCCCAGT 15571 28 100.0 33 ............................ TTACTTTTGCTATAAGCTAAATGCCCAAAGAGA 15632 28 100.0 33 ............................ TAGATAACTACAAATTAAGTAAAGCCCAAACTG 15693 28 100.0 33 ............................ CAAAGATTTGGACGACGAGGCGGAATTACGTTC 15754 28 100.0 33 ............................ TACAGCCCTTACGAGCGGAAGATGGAAATGGCG 15815 28 100.0 33 ............................ CAACGTCCAGAAAACGGCCGACGGTGACCGTCT 15876 28 100.0 33 ............................ CGACGAGGCCCGGGAAGCAATCTAAGCACGACA 15937 28 100.0 33 ............................ TCAACGTTTTGCCCTTTTTGTTTTACTCTCGAT 15998 28 100.0 33 ............................ TGTGGTTTTTGTACATGCTGGCAATGGCGTATT 16059 28 100.0 33 ............................ CGCGAGTCACGTGAACAGGATATTCGCGATGGA 16120 28 100.0 33 ............................ CCCAGGGTAGTAATCTAGTGAACGCGTATCCCA 16181 28 96.4 33 .....................T...... CTTCTTGCAGATAAGGCATTCCGTGGTCTACCC 16242 28 100.0 33 ............................ TCAGATTCATTTTTATATGGACGACCAACCACG 16303 28 100.0 33 ............................ TGGCAAACTGTGCTTCAACCATCAGGTGAGCAC 16364 28 100.0 33 ............................ TAGTGTTGTTGGTGTTGCCCAACGTCACCGCGT 16425 28 100.0 33 ............................ TAAAAATCCAGCTCCATTAATAGCACCAAAACT 16486 28 100.0 33 ............................ TTAAATCTTGCGTAAACGGGTCGTCATTGCCAT 16547 28 100.0 33 ............................ TGCCCAATCCTTTGCCAAGAAAAGAGGTGTTAT 16608 28 100.0 33 ............................ TATATATTGATTAGTAATGTCTTTAATTAAATC 16669 28 100.0 33 ............................ CGCCTATAAATTTAAAGGTCACAACAACATCTA 16730 28 100.0 33 ............................ TCATTCGTGAAAGTAATATTCAAGAAAACGTTG 16791 28 100.0 33 ............................ TCTAAATAGTACGGTGCAGAGTTTTATTAATCC 16852 28 100.0 33 ............................ CTCTTTTTCGTGCTTGCCATTGTACACGTAGAG 16913 28 100.0 33 ............................ TGGCATGGTAGTTGCTGGTAAGGATGCTTTAGT 16974 27 92.9 0 ..............-A............ | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.8 33 GTGTTCCCCGCAGGTGCGGGGGTAATCC # Left flank : GTGATGACCAGATTATCTCGATTGGTGCGCTTAAGAGTGATGGGCAAAATGAAACTGGTGCGTTTAAATGTCTCATTAACGTTAACCGTGGAATTCCCGAAGGCATCTCACGGTTAACGGGAATAACCAGTGCAGACTTGATAACGCAAGGTGTTCCGTTAGCTGAAGCGATGACCGGCTTACGTGAGTTTGTTAGCAATTGGCCCATTGTGGGCTACAACGTTAATTTTGATGACGGGTTTCTCTTGGCTGCTGCTCACGATGTGGACCAGCCCGCGATTAAAAATCGGATGATTGATCTTTTACCGCTAGTTAAAAAGGCTAATAGGTTCATGGATAATTATCGTCTCAGTACGGTGCTGGAGACTTATCAAATTACAAACGAGCACCCGCATAATTCAACGTCAGATGCGCGGGCAACTTTGCAGTTGGCATTGCAACTCATAAAAAAAAGGTGTAAGCGTCTTTTGAAAAGGCTGAGACTATGGGATTTATTTACT # Right flank : CTGCGCTTTTGCAGCTTTTTGACAACTCCATCCGCCGTACTAGTGGATTGGGACTCATCAGCTTCGGTCTGTGCACCGGCCTTAGTCGCGTCATCGGTATGTTCATCAGCTTCGGTAGATTCAGTTGTCCCTGTTTGTGCTTCTGTGTCTGTCTCGTTGTCCATTTTGTGGGCCTCCTCGAATATGCAGTCATGGGAGACCAGTCTCACGCCGTTCTTTAGCGTCCGCGGCATAGGTTGAATGGCATAGAAAAAGCCCCAGTCTTAAGACTGAGGGTCAAAGAATTTAATGTTTATAATTTAGGGGATAATTTTGCTCCATTCCTCTGCTGTAAGCTCAGGAATTGGGGTGTTAGAGTCGATTGCTTCATTTACATCACGAGTCATGTCCTTAACGCCCTGTTCTAGCTCGTCCGGATGTTGCTCAATGTGCAATGGATCCCACCAGCCAATAATTCGTTCCGGAAATGGCGCACCAAAGTGGTCCTCGTAAGCCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGTGCGGGGGTAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //