Array 1 97-2061 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDHR01000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 158 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 219 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 280 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 341 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 402 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 463 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 525 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 586 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 647 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 708 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 769 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 830 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 891 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 952 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1013 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1074 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1135 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1196 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1257 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1318 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1380 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1441 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1483] 1483 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1544 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1605 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1666 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1727 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1788 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1849 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1910 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1971 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2032 29 96.6 0 A............................ | A [2058] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8578-7268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDHR01000122.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8577 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8516 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8455 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8394 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8333 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8272 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8211 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8150 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8089 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8028 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7967 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7906 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7845 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7783 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7722 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7661 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7600 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7539 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7478 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7417 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7356 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7295 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //