Array 1 288926-291923 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUU01000001.1 Salmonella enterica strain CFSAN071969 CFSAN071969_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 288926 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 288987 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 289048 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 289109 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 289170 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 289231 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 289292 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 289353 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 289414 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 289475 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 289536 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 289597 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 289658 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 289719 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 289780 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 289841 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 289902 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 289963 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 290024 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 290085 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 290146 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 290207 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [290227] Deletion [290247] 290249 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 290310 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 290371 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 290432 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 290493 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 290554 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 290615 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 290676 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 290737 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 290798 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 290859 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 290920 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 290981 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 291042 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 291103 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 291164 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 291225 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 291286 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 291347 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 291408 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 291469 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 291530 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 291591 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 291652 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 291713 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 291774 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 291835 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 291896 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 50 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 308469-310939 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUU01000001.1 Salmonella enterica strain CFSAN071969 CFSAN071969_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 308469 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 308530 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 308591 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 308652 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 308713 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 308774 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 308835 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 308896 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 308957 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 309018 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 309079 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 309140 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 309201 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 309262 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 309323 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 309384 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 309445 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 309506 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 309567 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 309628 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 309689 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 309750 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 309811 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 309872 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 309933 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 309994 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 310055 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 310117 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 310178 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 310239 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 310300 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 310361 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 310422 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 310483 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 310544 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 310605 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 310666 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 310727 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 310788 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 310849 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 310910 29 100.0 0 ............................. | A [310937] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //