Array 1 277028-277302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJYCF010000001.1 Bifidobacterium pseudocatenulatum isolate LH_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================================================== ================== 277028 27 100.0 63 ........................... ATCATAATCACGATCGTCACGATCGGAACGACGATCGTCACGATCGTAGTCACGGTCATCGCG 277118 27 100.0 30 ........................... ATCGCGATCGTAATCGCGGTCATCGTCACG Deletion [277175] 277175 27 100.0 72 ........................... ATCATAATCACGATCGTCACGATCGGAACGACGGTCATCACGACGGCCACGGCTGCCGCGACGGTCATCGCG 277274 27 77.8 0 .........CTC...G.........GG | G,G [277296,277298] ========== ====== ====== ====== =========================== ======================================================================== ================== 4 27 94.5 55 ATCGGAACGACGACGACGCGGACGATC # Left flank : TTGAGCTGCACGTCGATCTGCGCCCAACCGTTCTTCACACGATTACGTAGCGTGACCAGCCCGTTGTAGGCGCTGACGGCCCAAAGCACAATAAGTACAACGATGACGGCAATGATAATGCCAACGACCATGACGACTCCTTCGTTAATGGCTCTTCACACCATTCTTGCATGCGCCCAGGTACGTTATGACAAAACTCATGCCCCCGTGTCTCATTTTCATGCAATCTGCATGGAAACGCAAAAGTGCCCCGTACCTTCCGGTACAGGGCACTTCAGTCAGTCAGCTATGCTGCGAGGGATCCTTTTGAGGCGTCAGTCCTCAAAAGGATCAAAGTCGCGGCGGACGCGACGGCGAGGACGCTCGGAACGCTCTTCGCGATCGGCACGGTACTCGTCGTAGTTCTCGTCGGCTGCGTAACGCGGATTGCGGTCGTCACGGCGGCTGCTGCGACGACGGTCGGAACGACGATCATCACGATCGTAGTCACGGTCATCGCG # Right flank : GATTCCTGATCTTCGAAGCCTGGAATGGCCAGGGAGATCTTGCCGCGATCGTCAACGCCCTGCACGACTACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACGGCGTCGATACGCTCGCCGTTGGCCAGATTACGGATCTGGGAGATGTGCAACAGGCCGTCGGTGCCCGGGGTCAGGTTCACGAAGGCACCGAAGGAGGTGGTCTTCACAACCTTGCCGTTATAGGTTTCGCCGGCTTCAGGAACGTGCGGGTTGGCGATCTGGTCGATGATCTGCTTGGCCTTTTCAGCGCCGTCGCCACCTTCGGAGGAGATGAACACGGTACCGTCATCTTCGATGGCGATCTCCGCACCGGTCTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGACCGATGACTTCGCCGATCTTGTCGACCGGAACGGTGGTGGTGATGATGCGCGGTGCGTACGGGCTCATCTCGGCCGGACCATCGATGCACTCGTTGATGAC # Questionable array : NO Score: 3.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-1.95, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAACGACGACGACGCGGACGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 82172-79956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJYCF010000010.1 Bifidobacterium pseudocatenulatum isolate LH_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 82171 36 100.0 30 .................................... ATCTGGTAGAGGCGGTCGGGGCTGATGTTG 82105 36 100.0 30 .................................... AGGTCGGAGACGACAAGCTCCCGTTCGTGA 82039 36 100.0 30 .................................... GCAAAGGAGGACACGAAATGAGCTCCCCAA 81973 36 100.0 30 .................................... AGGTCGCTTCCGAGGATTTGGATTCCGTCA 81907 36 100.0 31 .................................... ACATCATCAAAGCAGACATAAACAAGCCAAG 81840 36 100.0 30 .................................... ACACGACCGGCTGGCAGTATTCGGACGTGA 81774 36 100.0 31 .................................... TGTAGGACTCGTTGACGCCTCGGAAGGCAAG 81707 36 100.0 30 .................................... GCGATTCGGGTGAATACGTCGTAGCGTTTA 81641 36 100.0 30 .................................... TTACGGTCTGGTCGATGTTTTCGCTGATGT 81575 36 100.0 30 .................................... TCGGCGCTGACTCAACAGACAATGCTAACG 81509 36 100.0 31 .................................... ACATCGAGGCCATCAAACAGTTGGTGGCCGG 81442 36 100.0 30 .................................... TTGTCGTAACTTTGTTGGTTTGCCCATGCG 81376 36 100.0 30 .................................... CACGGCGGAAAATCAACGAATGGACCAAAG 81310 36 100.0 30 .................................... GCGCACCAAGCGTACGGGAGCTCCCTGCTA 81244 36 100.0 30 .................................... TTTCCCGCCATTGGATAAAACGGATTATCA 81178 36 100.0 30 .................................... GGACTCGCAGTACATCACCCACGACGACCT 81112 36 100.0 30 .................................... ATCAGGCCGTTTGCGAGGTTGAAGGCGTCA 81046 36 100.0 30 .................................... ACACCTTTTCGTTTCGTTGCATGATAGTAT 80980 36 100.0 30 .................................... AGCGAAGCGGGCAAGAGGGGCGCGGACCGT 80914 36 100.0 30 .................................... ATGTTGTCCAAATTCACATCCAACGCGCGG 80848 36 100.0 30 .................................... TACACGCATGTGGCCATAGTCGCAGGCAAT 80782 36 100.0 30 .................................... AGGTCGGAGACGACAAGCTCCCGTTCGTGA 80716 36 100.0 30 .................................... AGGTCGGAGACGACAAGCTCCCGTTCGTGA 80650 36 100.0 29 .................................... CCTCGATGTGACCGTCCGCGAAAACCTTC 80585 36 100.0 31 .................................... TCCATTATATCTAGTATGCGATACCGGCCAG 80518 36 97.2 29 ........................A........... GCAGTAGTATTACCGTCGATATTGACTGA 80453 36 100.0 30 .................................... ACACGACCGGCTGGCAGTATTCGGACGTGA 80387 36 100.0 30 .................................... CCGCGCCTCGGAACGTGAAACGGTTCGTGA 80321 36 100.0 30 .................................... TTGTCGTAACTTTGTTGGTTTGCCCATGCG 80255 36 100.0 30 .................................... AGGCCATCGACGTTGACTGCAATAGCATGT 80189 36 100.0 30 .................................... ATATTATCTAAATTTACGTCCAATGCGCGG 80123 36 100.0 30 .................................... ACCATTCTGAGAGGACTGCCCGGCTCGGGA 80057 36 100.0 30 .................................... ACATTGAAACCATCAAACAGCTTGTCGCCG 79991 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.9 30 GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Left flank : CGCATGGTGCGGCCGGGCCGTCTGCCGTATTCGAGGTAGTGATCCACCGCGGCCCGCTACAGCGACGCGCCCTTGCTGGGATAGCCGAGCTCGCGGATCACGTCGGCGGGCGCAGCGCTCGTATTTGACGTACAGGTCCACGGCCCTGTCACGCTGCTCCCTGCTGTACTTCGCCATAAGGGGGTTTTCCTCCCGGTCGGGGAGTCCAAGAAAACGTCATCACCTCGTTCGGACTGGATTGACACGCCATTTTGGACTACTTCAATTTAACAAAACACATTGCGCATGGATAACGTCCTCTTCGCCCCTAAGACGGTCGAGAAAATTCTGATAATCGTTGATACCCATGAGCACGTAGGACAGCGTTCCGTTTGACGACAAGGACCGGCGCACGGTCGGCCTTAGACAGCACCGTAGCGGTGCGTCCATTACTGAGTTCGCCGACTGGCACAAGATCCTCAAGCACAAACTCTGTCAAGGTCACATCCACTTTCCCTCCG # Right flank : CGATAGCCTTGGAGAATCCTGAACGTTCTATGAGAACTGAACATAATCTCCATCGATATACCGACTTCTTCCCTCTGTCAAAAGGACTTTTTTGTCGCAGCATTCCAGGTCCAGAAGCTGCATATGGTGTCTTAATAATTCTCGATGCAAATAAAGTAATTGGCCATTATCACAATATTGAGTTATATGAAGCATCACAAGCATCCTGCCCTCGGCAAGAGCGCCGGCAGTATCAACTACCAGTTGAATTTTATCATAAAGAGAACCCAGAGAACTGGTATCAACACGCGGTTTAGCCATTGCTATCATTGACTTTATATCAGCTTCATCAAGAATACTCAGAGGCAAATTCTCTCTCCATATTTCTTCTTGAATAATCGACTTTATCTCAGTTTGTAACAACAATAATCTACTCAATTCTTCAGGATTAAATCCGTCATTTAACTTCTTAACTGCAGCCTTTTGAAACAAAGCATCATAATCTAGTACTCCTGCGCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //