Array 1 1628-1360 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMPB01000100.1 Vibrio cholerae strain EL2338 contig100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1627 28 100.0 32 ............................ AACGGGCCAGCCCCGCCCTTGGTGCTCTCGGG 1567 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCTTTATTAG 1507 28 100.0 32 ............................ AATCCTCAGTGCGTAAAATTTCATCAATCTGC 1447 28 100.0 32 ............................ GTCAGAGTTTCGACATCACGATTGAGTATTTC 1387 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGGTGTTTTTTATTATGAAAATGGATGTAACGAGTGATCCAATGAAGGTAAGCTTCTATGGTCTTTTTGGCATAGTATCGAGTTTGCATAAATTCGCGAACACTTAACAAAAATTGGGATTTCATATTGTTCTCACTAAATATTTGCTGGTTATTTATACAGTATTTGTTGGTTGTTTTTATGTCAAGAGGCTATGCGTACATGAGCAATCTATAAGCTGAGATTTTTGAACGGTGTGATGCTCAACATACTGATTTGGAAGGTTGCTATGGTAGTATGCACCCAGTGGTCTATTAATTAGAAAGCGGTAGCCTACCTGTTGGAAAGGTAAGAAGCTGTCTAGAAAGCGTTAACTGGCAATGAAATTACCCATCTTTTTTTGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCTAGCAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGCTTTTTCACATTGCAGGTAAGCATTTTTTAAGCTCAAGAAGTAACATATATGCACTAGAATCACTGAGTTGATATGGATTGAAATTGCTACTTGATGAGAATTTCAAGACGAGTGGTTTAGTTATGCTTGATATAGGAATGTATCCCATAGACCAGTCTTGAAAATCTCTGTTACGTATCTCTTGATAATCTAAGATAACAACCCTGTTGTGGCGGTGATCTTTTATGATGTTGTTGTACAAAAGATTAACTTTTTCTCTATCACCTTCTAAACATTGAAGAAAATATTCATTGTTAAAATAGAGTACGCCAGTTATATCTCGTTCAAAGTTATATTTTTAGCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16967-23240 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMPB01000070.1 Vibrio cholerae strain EL2338 contig70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16967 28 100.0 32 ............................ GCCCCTGATTTGGTTCCGGCTGAGTACCCTGC 17027 28 100.0 32 ............................ GTGATAAACGGAACACCCGTTTATATCGCCTG 17087 28 100.0 32 ............................ GCGAAGGTCTTGCTGAGCACGTTGTTCACTGC 17147 28 100.0 32 ............................ TAAAGGAAATGATAGGCCGTGATAAACGGAAC 17207 28 100.0 32 ............................ TTCATCGGCAGCGCGGCGAATGGTTTCTAGAA 17267 28 100.0 33 ............................ AAAAGAAAAGACATGGCACAGTGAGAAGTATTT 17328 28 100.0 32 ............................ ATGCTGCGTTTATCATCTGAGAGAGAATTTTG 17388 28 100.0 32 ............................ TTCCGGTTTGGATGAGGAACGCCAGTCCATGT 17448 28 100.0 32 ............................ TTGAGGATAATCCTGATATTATCGGCTCTGAG 17508 28 100.0 32 ............................ TACAGGTGAGCTAACCGCATTCTGCGGTCATC 17568 28 100.0 32 ............................ AATGCAAGAGCATGAAAAGGGTGATTATCTTC 17628 28 100.0 32 ............................ TGAAAAAGAACGGATGTATTTATCGCTAAAGC 17688 28 100.0 32 ............................ TTCCGTCTACGTCCTTGAGGCTATGGAATAAG 17748 28 100.0 32 ............................ TTTGTCTGTAGATAGGGTAGTGAGGTTTTTGT 17808 28 100.0 32 ............................ TACTCTCGATCTCGGTGCGATTGTGGGTATGT 17868 28 100.0 32 ............................ TCGTTGAAGAAATGGCTCGTGATGCATGCCCA 17928 28 100.0 32 ............................ TGCGCTGTTTTCACCCATTCAGTGAGCGTGGT 17988 28 100.0 32 ............................ AGATGGATGGCTTATTAAAACAAACACTGTGA 18048 28 100.0 32 ............................ ACTAGAAACGAAGATAGATCAATGAGCGTTTG 18108 28 100.0 32 ............................ ATTGAGACGCTATCAGAACCAGATCTTGAACT 18168 28 100.0 32 ............................ AGATGGATGGCTTATTAAAACAAACACTGTGA 18228 28 100.0 32 ............................ TGTTTTAGAAATAACAAAGCTCATTTGTGCAT 18288 28 100.0 32 ............................ ACGCTAACTGCTGCGATGGAATGGGCGCCGCT 18348 28 100.0 32 ............................ GCATCATCATGGGATGAAAGTGAGTTAAGGAA 18408 28 100.0 32 ............................ ATCTGAGAGATAAGGATGAATTTCCACTTTGC 18468 28 100.0 32 ............................ ATAAGGTTAAAAAGCTAGGAGATTACCGTGGA 18528 28 100.0 33 ............................ ATACTCCAGTTGATATTACTAAGCTTTTACCGT 18589 28 100.0 32 ............................ TCACAGGCAGGAAGTTTTCCGACCATGAATTG 18649 28 100.0 33 ............................ CAGCAATGTGAATTTGTGCTTACTCAGTCAATG 18710 28 100.0 32 ............................ AAGCCGCGGAAATCTTTGGGTAAGAAAGCTTA 18770 28 100.0 32 ............................ GCTTACATCGATGTTGATACGCAGTCTGGTGA 18830 28 100.0 32 ............................ CGTTTCATGCTCTTGCATTGGAAGCATTAGAG 18890 28 100.0 32 ............................ TCCAAAGGCTGCATACCTTCGATGTTGGTTAC 18950 28 100.0 32 ............................ CTTCCTGACGAAATACGTTATTACGCTTTTAT 19010 28 100.0 32 ............................ AGGCATTGGCTCTGGTGTCGATTTCGGTGAGC 19070 28 100.0 32 ............................ ATTAAAAGCGCCTGACTCCCGAAGCGCTTGGT 19130 28 100.0 32 ............................ ATGGCGAAGTTGAATCCTTTTTAGAGCTACTT 19190 28 100.0 32 ............................ AGTAGAAGAAGCAGCAAAACTTTGTTTTAAGA 19250 28 100.0 32 ............................ GACTCGCTCTACAAGTGAGCCGACTCTAAATG 19310 28 100.0 32 ............................ AAATCAGAAACTGCTGCTCTATAACTGCCAAT 19370 28 100.0 32 ............................ TACCAGAAAGGAAGCTGAGGACTACTGGGAGA 19430 28 100.0 32 ............................ ATTAGGCGACCACGTTACGCCGTTGTCCGTTG 19490 28 100.0 32 ............................ TCAGCAAAGCAACAGCGGATGAGCTCAAAAAA 19550 28 100.0 32 ............................ TATTCAAAGACCGCAATAAGGCGCACGAAGCT 19610 28 100.0 32 ............................ TTACGGTGGTTAGAAATCGGTTTAAAAAATAT 19670 28 100.0 32 ............................ TTACAGCGAAGTCGCTTTCTGTCGAACTGAAT 19730 28 100.0 32 ............................ TACATCACGGTGTACATCGACGGCCTTGCCGC 19790 28 100.0 32 ............................ ACTAACCACTCTTGCATGGTGCGCATGCGCTC 19850 28 100.0 32 ............................ GCATAGTGCAGGTCTCGCTCTTCCATTTCTTC 19910 28 100.0 32 ............................ CGAAAGTGCGCATCAAAGTGCCAGAGCCAGAA 19970 28 100.0 32 ............................ ACCACTTGATTCAGGATTCGTTCATCTCGCTG 20030 28 100.0 32 ............................ TTGCAGCACAAGGCTTACAGAGGGGTGCTGCT 20090 28 100.0 33 ............................ AGGTGGGGAAGAGGTAAATTAAGTAATTTTTAT 20151 28 100.0 32 ............................ ACGCGGCGTTTTTCCTGCTTGCCGTTATGTTT 20211 28 100.0 32 ............................ AATGGCTAGCGGCTCCCACTCGGTCTTTTCTT 20271 28 100.0 32 ............................ TTTAGAAACCAGTTCGCCATTGAAACCTAGCC 20331 28 100.0 32 ............................ ATAAGAGAAATCACTAACGCGGCCAATGTTAT 20391 28 100.0 33 ............................ GTTACCCAGAAGCTTTCTGTTTTCATTTGTCCT 20452 28 100.0 32 ............................ CGGTCATGAGCGAGGCAACCGCTATTCCAATG 20512 28 100.0 32 ............................ AGCAGAAACCGTGATTGCTTGGCTATCGACTC 20572 28 100.0 32 ............................ AACAATCTGGAGAATATTCCTATGGCTAACAC 20632 28 100.0 32 ............................ GAATAGGTGCCGTGAGGATAGTGGTTCTGAAA 20692 28 100.0 32 ............................ ATGACTAGAGATGTATTCGTTTCTAAAATCTT 20752 28 100.0 32 ............................ ACTGCTCTTTAATCCAAGAATTATCACCATCG 20812 28 100.0 32 ............................ GCTTGTCGGCTCCACGCCGTGTAATTTTTCAA 20872 28 100.0 32 ............................ TTCAGCCTCTTCAATGGCCGTGTATAGACGCA 20932 28 100.0 32 ............................ TGGTCAAAGATGGTAACGCCTATGTAATCAAG 20992 28 100.0 32 ............................ ACGTTACTCAAGTCCGCGCGTCAGTTACTCCT 21052 28 100.0 32 ............................ ATCAATCCACAGCTTCAGGTAGGTAACTTCAA 21112 28 96.4 32 ...........T................ GTAATGGCCGTGCATTGAATAGAATTCAAGTA 21172 28 96.4 32 ...........T................ GTTAAATGGCGCTAAGATTGAGATGCTAAATA 21232 28 96.4 32 ...........T................ CCCCCGTGGGCAGTGAAGCTGTGGTAATGGCG 21292 28 96.4 32 ...........T................ ACTCTCGCCTGACGTATTGGAAACGAAAATAA 21352 28 96.4 32 ...........T................ AGCAACGCAAACAATAACAACGGAGCAGGTCA 21412 28 96.4 32 ...........T................ TTCTTGTAGTAATCAATGGTTAGCGGTGAGCT 21472 28 96.4 32 ...........T................ AGCAGAAAAGGAGGCAATCAGTTCAGCGAAAG 21532 28 96.4 32 ...........T................ GAAGCTTTGAAGCTTATGGGCTGGCAGTCCTC 21592 28 96.4 32 ...........T................ TAGTCGGCAGGGATGCCCCCACTGGCAGAAAT 21652 28 96.4 32 ...........T................ TGTCTCTGGCACTCGCCAACCCACCACGGTGT 21712 28 96.4 32 ...........T................ TGACCCATGGCGATGGCGAGGTGTTCACGCAT 21772 28 96.4 32 ...........T................ CCAAGAACTCACGATTACAGCAATAAACACCA 21832 28 96.4 32 ...........T................ GTTACTAGGGCGCGGCCTACCATAGAATAAAT 21892 28 96.4 32 ...........T................ TTGCGTTTCAAGTCATCCAATTGGAATTGAAC 21952 28 96.4 32 ...........T................ ATTTTTGCGGTGAGCAACACGGTGAAGATTTT 22012 28 96.4 32 ...........T................ AAGAGTGCGCTTAATAAGAGCAAGTCGAGCTC 22072 28 96.4 32 ...........T................ TATAAACGGACAGCAGATTTTTATGCTGAATA 22132 28 96.4 32 ...........T................ AAAATCGATGCGTCCCACCCACACCACCAAAA 22192 28 96.4 32 ...........T................ GTGTTTAACGACCTGACCGGTGCTGTTGTGCC 22252 28 96.4 32 ...........T................ CAATAGAGCTGCATCCTGGTCATGCTACATTT 22312 28 96.4 32 ...........T................ GTCCACCAGCATAACTCGTGAAGTGATGGTTT 22372 28 96.4 33 ...........T................ ATACGGCTAGAGCTTGGCGATATCGAGTGCGAT 22433 28 96.4 32 ...........T................ AGACGGCCATTCCACTGCAGTTTGAAAAGTAC 22493 28 96.4 32 ...........T................ TAGGAGAATGACATGACATTAGGTACAGAATC 22553 28 96.4 32 ...........T................ AAGAGTCGCTTGAACCATCAATTTTGTAATTG 22613 28 96.4 32 ...........T................ CCAATATCGTACCAGAGCAAAGTTCCTTGAAG 22673 28 96.4 32 ...........T................ TTCGAGCGGCTTGCCCGTTTGCGCGTTCATGC 22733 28 96.4 32 ...........T................ TTTCCATCCAGTTGCAAGCTCAAACTGCTTTT 22793 28 96.4 32 ...........T................ AGTATAGCCAGTAGGGAACTCTGAGACTGCAA 22853 28 96.4 32 ...........T................ AATCTCTAACAGCGTTCAGGTAAGTCGGGGCT 22913 28 96.4 32 ...........T................ GTCCGGGGTTCGGTAGTAAGTCGACCCGATGT 22973 28 96.4 32 ...........T................ ATCAAATCTTTTATCATTTGCTAGTACGAACA 23033 28 92.9 32 ...........T.....T.......... AATTGGGGGTAATGGGCTAGTAGGGTCATTGG 23093 28 96.4 32 ...........T................ TTTTTCTCATAAGTGCGGATGTAGCGTTCAGC 23153 28 100.0 32 ............................ GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 23213 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 105 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTGCGCTCAAGGTAGTCAGTGCGGTTATAGGCACTGCGGACCTGATTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //