Array 1 170-403 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRCD01000039.1 Campylobacter jejuni strain CB305 39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 170 36 100.0 30 .................................... TTCAAAAAAATTTATAAAGGCACTTTGCCT 236 36 100.0 30 .................................... CGTATATTCTAAACTATCTGAATTTTACCA 302 36 100.0 30 .................................... AGACAATGATGATTTAATTAAAAGGATTAA 368 36 94.4 0 ...........C..........C............. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Left flank : GAAAAAGAGGAAGTTAAAAACGAACAGTATTACGCTGTGAGAACTATACTAAATCCGCAAGACAATATTTACAAAACCGCAAGAGTTCTTTCGATAGTTGAATCTGAATGGGTAAAAAACACCATTTGAAAGAAAAAACATTGATAAAATAGGCTTTTTAGATAAGTCTA # Right flank : CAAAAATTTTGTAAAATAAAACAATACAAGATTCGGTTATGAGAAATTCATAGCAAAAATACTTTTACAAAAAAAATAGAAAAGATTGGCAAAAAATTAGAAAAGCAAAAAACAAGATTCGCTATAATAAAAAATCCGCTTTAGAGCTGCAACTCTAGCGGAAAATTACAACAAAGGCTAACTATGAAACGACATAGTAAGCGTTTTGTGAGATTATACCTAAATTTTAGGTTTTTTAAGCTTAAAGTTGAAGTATTTTTCTAGCAAAACCGCAGGGGCAGAAAAGCCCCTTGCCTTTGTTAGTACATGAAACTACAAATTCTCATTCATTTTTCCAAGTCAAATAAAAAAGAAATCCGTTTCAAAACACAGCTCAATAATCCCAGTCTTAATACTTTTAATTAAATATACAAAGGCAACAAGATTAAGAGAAGTGCGTTCGGTTTATAAGTGATACTTAATAAAAAGCGTGTATAATACATACTCATATCTATTAATTT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 18363-17667 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRCD01000012.1 Campylobacter jejuni strain CB305 12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 18362 36 100.0 30 .................................... CCTAACCTAAAGTATTTTTCACCCTTGAAA 18296 36 100.0 30 .................................... TCTTGACCTAGCTTTTCAAGCCAAAGTTTG 18230 36 100.0 30 .................................... TATTCATCATAATTTTGCCAATAATCAAGA 18164 36 88.9 30 ......T...............C..G..A....... AGTCTTCTTTTAAGATTAATGGCAAAAAGC 18098 36 100.0 31 .................................... TGCTCAAAGATCGTTTTGATAACAATTCGAA 18031 36 100.0 30 .................................... ACCGCAGAATAAATATTATGCTTAAGTAGG 17965 36 100.0 30 .................................... TATTCTACCCAAATACGCATTAAACTCATC 17899 36 94.4 30 ..........GC........................ CAAATCCAAAGAGTGTGAAATGGAAAATTA 17833 36 97.2 29 ..........G......................... ATCTTAGCACCATAAATCGCTAGCTATAG 17768 36 94.4 30 ......T...G......................... CTTTCAAAATCAATTTTGCAAACTTTAAAA 17702 36 86.1 0 ......T.....GG.T...................A | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 96.5 30 ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Left flank : GTAAGAACTGATTTATTTGTAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGCATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGCATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGTTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTTAGATAAGTCT # Right flank : TAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCACAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATCGTTGTAATTTTGGCAATTTTAGAATCGCTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTTCCCTCCAATTATCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGGATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTCACCA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //