Array 1 373143-375245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATLZ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 369 NODE_1_length_633557_cov_73.9461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 373143 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 373204 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 373265 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 373326 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 373387 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 373448 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 373509 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 373570 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 373631 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 373692 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 373753 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 373814 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 373875 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 373936 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 373997 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 374058 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 374119 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 374180 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 374241 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 374302 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 374363 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 374424 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 374485 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 374546 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 374607 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 374668 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 374729 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 374791 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 374852 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 374913 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 374974 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 375035 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 375096 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 375157 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 375218 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 391378-392915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATLZ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 369 NODE_1_length_633557_cov_73.9461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 391378 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 391439 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 391500 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 391561 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 391622 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 391684 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 391745 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 391806 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 391867 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 391928 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 391989 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 392050 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 392111 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 392172 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 392233 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 392294 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 392356 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 392417 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [392459] 392459 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 392520 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 392581 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 392642 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 392703 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 392764 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 392825 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 392886 29 96.6 0 A............................ | A [392912] ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //