Array 1 6356-9167 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYPJ01000026.1 Listeria monocytogenes strain CDPHFDLB-F14M01626.68-3 F14M01626-68-3_Contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6356 36 100.0 30 .................................... AGAAATTATTCTAGCGATAACGGTTAGTGC 6422 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 6488 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 6554 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 6620 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 6686 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 6752 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 6818 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 6884 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 6950 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7016 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7082 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7148 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7214 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7280 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7346 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7412 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7478 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 7544 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 7610 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 7676 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 7742 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 7808 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 7874 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 7940 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 8006 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 8072 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 8138 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 8204 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 8270 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 8336 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 8402 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 8468 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 8534 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 8600 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 8666 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 8732 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 8798 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 8864 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 8931 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 8997 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 9063 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 9129 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [9154,9160,9163] ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 125050-123721 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYPJ01000008.1 Listeria monocytogenes strain CDPHFDLB-F14M01626.68-3 F14M01626-68-3_Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 125049 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 124983 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 124918 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 124854 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 124788 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [124779] 124720 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 124655 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 124590 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 124524 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 124460 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 124395 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 124330 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 124265 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 124202 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 124139 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 124073 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 124010 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 123945 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 123879 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 123814 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 123750 29 93.1 0 .......................C....C | A [123725] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAACCCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //