Array 1 27032-23295 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXZB01000003.1 Streptococcus mutans strain UAB-14 NODE_3_length_208492_cov_116.645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 27031 36 100.0 30 .................................... TGCTTTTTGCTTTCTTTCTCAATTCCTCTA 26965 36 100.0 30 .................................... ATGAAATTTTGAAAGGACTTGAAAACGATA 26899 36 100.0 30 .................................... GTATACTGTACCGTCGTTTTGAATAAATAC 26833 36 100.0 30 .................................... TTTTGCAAAGCGCAGAGCTTGCACCAACAA 26767 36 100.0 30 .................................... TGCTTTTTGCTTTCTTTCTCAATTCCTCTA 26701 36 100.0 30 .................................... ATGAAATTTTGAAAGGACTTGAAAACGATA 26635 36 100.0 30 .................................... GTATACTGTACCGTCGTTTTGAATAAATAC 26569 36 100.0 30 .................................... TCCACTGAGAAAGCTGATTAAAGGTCAAGT 26503 36 100.0 31 .................................... CTTCCGCTAGCGCTAAAAGGTGCCGTGTTGC 26436 36 100.0 30 .................................... AGCATGACAGGCATAGTCTTTAAAGACGAC 26370 36 100.0 30 .................................... CTAAAACTCAAATCTAGCGTTTTTGTGTCT 26304 36 100.0 30 .................................... GTGTAGCATTGAAACTAGATGATAGCGTGT 26238 36 100.0 30 .................................... AAATCACGTTAGTTTTGTCACTGGTGTTCA 26172 36 100.0 30 .................................... CCGTTTAAATAAATGTTCTTGCGTCCGAAT 26106 36 100.0 32 .................................... TGGTGTTATGCAAGAAACATCTAAAAATATGT 26038 36 100.0 31 .................................... CAAGCTTAGTAGCTCTGCGACCTGCAAATTC 25971 36 100.0 30 .................................... GTTAAATTGATTTTCGTTGTCTCGGTCTGA 25905 36 100.0 30 .................................... CGTCAGAATTTTTCCATTCTTGTTCTTGAT 25839 36 100.0 30 .................................... AAAATTGAATATGGTCATGATAGTGATTAC 25773 36 100.0 30 .................................... TTTTACAAATTCAACGTTTTCCAAAAGTTC 25707 36 100.0 30 .................................... CGTTTTTTAACAAAGTATGGGCAGGAGCTT 25641 36 100.0 30 .................................... CGGTATGCAAAAGCTGGTTTCAAAAGCTTT 25575 36 100.0 30 .................................... AATTACAATCAGTTTATAAGTTGCAATGTT 25509 36 100.0 30 .................................... CGTAAATTTTTCGACCTGTTCTTGCGGTTG 25443 36 100.0 30 .................................... GCAGATGCCCGCGTGGTCTGCTCTGCTTCT 25377 36 100.0 30 .................................... TACTATTGCTCCTAAAAACTCAAAATTACG 25311 36 100.0 30 .................................... CAAAATCAAGCGCTCAAAGAGTGCAAACAG 25245 36 100.0 30 .................................... AGAGCTTCAAGCGCTCTTGGCGATTGTGAA 25179 36 100.0 30 .................................... CAATTACTTCAGCGTTTGTATCGCCTTTCA 25113 36 100.0 30 .................................... GTTAAGATTGCGCCCAGAAGCCCAATCACT 25047 36 100.0 30 .................................... TCAGCTCTTGTGTTTTTAAAAAAAGAAAGG 24981 36 100.0 30 .................................... AAAAAAGTATTTGACCCCGGCGAAAAACAC 24915 36 100.0 30 .................................... CCATTCTTGCTCTTGATTAGTCAGGTCAAA 24849 36 100.0 30 .................................... AAATTTTAAAATAAAAAAGAGGTGATTTTA 24783 36 100.0 30 .................................... GCTTACTGCAGGACTCAAAGCTTTTAATCT 24717 36 100.0 30 .................................... TGCAAAGGGTTTTCTAATCCCATTTGAAAG 24651 36 100.0 30 .................................... ACACCCAATCACCCAAAGCTTTGAGAGCCG 24585 36 100.0 30 .................................... ATTGTCAATCGTCGTTCTGCATTCGCAACG 24519 36 100.0 30 .................................... ATGGAAAAGAAAGGTAAAGAAAATCACATA 24453 36 100.0 30 .................................... AGCAGCTGATAAGCGTTAGCAGAAACAAGA 24387 36 100.0 30 .................................... ATCAACAGGCACACTATTTGTGTTTATCCA 24321 36 100.0 30 .................................... CGCGACTGTCTTAACTTTTCTGTAGCTGAT 24255 36 100.0 30 .................................... ATTTTTTTGTTGCTGTTCTGCGTGACATTG 24189 36 100.0 31 .................................... CCGTAAATTCGCTTAAAGACGAAAATTCACG 24122 36 100.0 30 .................................... GTATACAGAATGCAAAATCAAAAAGATGGA 24056 36 100.0 30 .................................... CTGCACTTGAGTACGTGCCTAGATAACGCT 23990 36 100.0 30 .................................... TTAGCGGCTTGACTACACCGCAAGCAGAGC 23924 36 100.0 29 .................................... GATTTCTAAGAATTTTAAAAGGTGTCATA 23859 36 100.0 30 .................................... GCAGGATTTACATGATAACGATTTAACTTT 23793 36 100.0 30 .................................... AGTGACATCAAAAAAGAATTAGAAAAATTG 23727 36 100.0 30 .................................... AGTGACATCAAAAAAGAATTAGAAAAATTG 23661 36 100.0 30 .................................... AGTGACATCAAAAAAGAATTAGAAAAATTG 23595 36 100.0 30 .................................... CAATAGAGTAGCAGCTTACGGCTATGCTAA 23529 36 100.0 31 .................................... CTGATTAAAGGTATGATTTGATGAAATTCAT 23462 36 100.0 30 .................................... TCAACAACCTAAACAGCAAAATACAAGTTT 23396 36 97.2 30 ...................................T CGGCATATATAATCCGTAAAGGCGGCACAT 23330 35 75.0 0 ..........CA.......A.TG..T-.A.T..... | A [23315] ========== ====== ====== ====== ==================================== ================================ ================== 57 36 99.5 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTGAGGTATAATATAAGCAATCAAAACCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : GCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 127996-126564 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXZB01000003.1 Streptococcus mutans strain UAB-14 NODE_3_length_208492_cov_116.645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 127995 28 100.0 33 ............................ TACGGTTCAAACGCTTGTTGACAATAATGACGT 127934 28 100.0 33 ............................ TACGTCCGTCACGATTGCTATTAAAATCAAAGT 127873 28 100.0 33 ............................ TCACAAAAGCAATTGCTAAGAATACGGTTCAAA 127812 28 100.0 33 ............................ TAGCCGTATACTGTGCCGTCATTTTGGATGAAG 127751 28 100.0 33 ............................ CAGTTTGATGAGTGTTTTGACGTAGAGGATTTT 127690 28 100.0 33 ............................ CGCAAATTAAGGTGTCTCTCATGCATTTTAGCG 127629 28 100.0 33 ............................ TATATTTTTCCCGTTGAGGTAAAAGCCACCAGT 127568 28 100.0 34 ............................ TCACTAATAAGAGCTAGACTAAGAGACGGCTACA 127506 28 100.0 33 ............................ TAGCCAGTTGACTCAGTGAGCTTAATTATCGTC 127445 28 100.0 33 ............................ CGCTGAGATGGTGTCAATGTGTCCGACCGCTAC 127384 28 100.0 33 ............................ CTGGAGGACTGCAAAAAAATTCTATTTTTTGGG 127323 28 100.0 33 ............................ GACTAGCTGCATTATCATTATGACAGGTGATCA 127262 28 100.0 33 ............................ TAACCAAATCTTAAACACTCTGCTTAGTAAGCA 127201 28 100.0 33 ............................ TAATTAGTCCGTCGTCACTAGCGCTAATATAGT 127140 28 100.0 33 ............................ TAAGCGTGTACAATTGCTAGAAAGCTATGCTGA 127079 28 100.0 33 ............................ CACAAGTTGAGATGGTCTTGTCTAACAAGGCTA 127018 28 100.0 33 ............................ TAACCAAATCTTAAACACTCTGCTTAGTAAGCA 126957 28 100.0 33 ............................ TTACCGAGTACATTTCCATGAACTCTTTATCCG 126896 28 100.0 33 ............................ TTGTTGTGTCAATTTACCTAAAGACTTTTGAGC 126835 28 100.0 33 ............................ TGAAATTGAATGATGATGGAAAACTAATTGGAA 126774 28 100.0 33 ............................ TGATGCAAATGCTACGGGGCGTATTGTTGTAAC 126713 28 100.0 33 ............................ TTGTCTTTGCCCTGTCAATAAAACCTTCATCAT 126652 28 100.0 33 ............................ TGAGTTTCTAGAAATTCTATAGCGTCTCTCAAT 126591 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 24 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //