Array 1 1696697-1695337 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041405.1 Paenibacillus thiaminolyticus strain NRRL B-4156 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 1696696 32 100.0 34 ................................ TTCTTCTCTCTATTGGCCATCTTTTCACATCCTC 1696630 32 100.0 35 ................................ AGACGGTAGCAGTCCAGGAAGTCCGGAAAGAATAC 1696563 32 100.0 32 ................................ AGTACGGGATGATAGACACAAAATCGAAAAAC 1696499 32 100.0 34 ................................ TTTACATTCTTGTTTGTGCTCATTTGTTGCTCAT 1696433 32 100.0 33 ................................ TGCTACGCCCATAACACCGTCGATCGCACGTTG 1696368 32 100.0 34 ................................ CAAAAGAAATTCGAGCAAAAAGCATCCAAAGAAA 1696302 32 100.0 33 ................................ AAACCATAAACTCATGAGCCACGCACAGCCGGC 1696237 32 100.0 35 ................................ TTGCTGGTTCCCAATAGTAACGGTTCCGCGTTAGC 1696170 32 100.0 33 ................................ ATGAAATAGCGGATCTGGCTCAGGCACTAACCT 1696105 32 100.0 41 ................................ GGGGTGATGATCATGAGGCTGGATCAATGTATCTGTATCGG 1696032 32 100.0 35 ................................ TTGTAATGGATATCGATCGTCTTGGGCGCGGCGAT 1695965 32 96.9 35 .................C.............. ATGACTGCTGGCACGCGGCCGGCGGCGATATTCTC 1695898 32 100.0 34 ................................ AACGGTTTGATTACGGGACTTGCGGCGTGCAAAC 1695832 32 100.0 34 ................................ TTGTATTGACGGGAGGTGTACGATTGCGTTCGTA 1695766 32 100.0 32 ................................ ATTGTTGATTCTCGATCCAGCGTATGTTGAAC 1695702 32 100.0 36 ................................ TGATTATGGCGGCCACTTTATTAGCTGGTCACTTAA 1695634 32 100.0 35 ................................ GCCCTGAATGCTATTACGTAGGTGCCCGCTGTCCC 1695567 32 100.0 35 ................................ AAGACCTGGGGGCCGCTGACGGAAGACGGGCAGCC 1695500 32 100.0 34 ................................ CCCAAACGCCTTATTGAGCAGTTCGAAGTTAAAT 1695434 32 100.0 34 ................................ TGGACATTAGAGAAGCGCTGTGAGCCCAATATTT 1695368 32 87.5 0 ..........G.........C...G.....T. | ========== ====== ====== ====== ================================ ========================================= ================== 21 32 99.3 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ACGTATCGTGGCGTTGGTGTACCGTATGGTGTTCATCGGTTTCCGTCCCCATACATGCCTCTCCTTCCTACCATCTTTTCCTTTATTATACCTGATTATAAGTGGTGGGGAATAGGGTGGAAATCTAGTCGAGTCTATGGTGTTATAACGATTCCACGGGAGTTTTCGATTTTTCTGATTCTTTTTTTGGAGCGGTAGATCTAACGCTGTGCTTGTTCAGAATAGTCTGAAATTATCCATTATTTCGATCCCTCTGTGGTATACTGAAAAAAGGAGTTTAGAACTCGTTTGAAATGGAGTGAAAATAAATGAAAAATCGGTGCGAATGTGAAGTGCACATGAAATCCCTAGGGGATTCGCACCAAAATTATTGAAATATTGTCCAATTCAGTTTGGAAAAGTTAATTAGTTTAAAGCTATTTCGAGCTAAATCTCTCATTTTCTCCGAGATTTTAGCAAAAAACTGATTTTATTGTTATATTTTATGTTATTTTTTTGCT # Right flank : TCCCAAAACCGGCCTTCGGCCTTGCGGAAAAGTTAAAAACGTTTCCGATACGCCACAAAAGCAAATTTTCTATGACAAACCCGGTTGTGATGAGGCTGTCCCATAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATATACAGATAATAGAGTGGCAGGAAGACGGCGGACGGAAAAGCGGCGGAATAGGGACGGGTTTAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAAATCCTGCATGAATCAGGCTGTTGGAAAACCCCTGTTTTTTTCGGAAGGTGAGTACCTAATCGAAACTTAGCATTCAGAGCGTCATCGCCTTCTGGAGACATCATAATCTCCTGGGGTTTTAACGTGTGGAGGAATTGCTGCTATTTTACAGGAATTTCGGCTCAATGAGTCGACATTTCAAGGAATTGCTGCACAGCTACATCATTTTAGGGCCTTTTGAGCTAAGTCGAAGAGAAACGGGTGAAATTCCTGCAGTTTTGCAGGAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1991394-1990701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041405.1 Paenibacillus thiaminolyticus strain NRRL B-4156 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1991393 32 100.0 33 ................................ CCGTTCTTGCTCGTATTCTGATAAGGAATAAGT 1991328 32 100.0 34 ................................ AACTCTTCGAATGTCTTCGGCGCGCCTGTCGGCA 1991262 32 100.0 34 ................................ AAACAAGAAAAGAACGGGAACCTGGAGCGTTACG 1991196 32 100.0 33 ................................ CGTCGCCTCGTCCGTACTGTGGCCGAGATTTTT 1991131 32 100.0 35 ................................ GTTCGGAATGGAAACGTGCCCGCCACCCCGGCCGG 1991064 32 100.0 34 ................................ AAACAAGAAAAGAACGGGAACCTGGAGCGTTACG 1990998 32 100.0 34 ................................ CGGAGACGGCGGTCGCCTGGGCGCAGCAGGCATT 1990932 32 100.0 35 ................................ GCTCTTTGTCTGTAAATTTACGGGACGTGGATGGG 1990865 32 100.0 34 ................................ TGGGATTGCGTTCAGTTCCAAGGCTGGCATTTGA 1990799 32 100.0 34 ................................ GTCAACGAAAAACGTACCCAGGTTGAATTTTTTG 1990733 32 90.6 0 .........................C..G..C | G [1990703] ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.1 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CACCACTTATCTGGTTGACCTGCTGAGTCCGTTGGAGACCCACATGAGCAGATACCTCGTTAGAGCCAGCGGTAATGATTATTGCCCATAATGTAGCCCCGTGTCGCTAGCCCCGGGCCCACAAACCGGGGCTTGTCCTCGGCCGCCCTCAAGCAAGGGACGACCCGTGAGTGCAACGACCGATACCCTATCATGCTGGCCCATGATATACTAAATGAGAGAACCAGTTCAATAATTCAACAGAACGAGTGGAAGATTCAGCCCTTTGCCCCGGTAAGGAAAGCGGAGTTGTGCAACTTGATGATTGGGGCACACCTACCGGTGCGAATGTGAAGCGCACATGAAATTCCCGGGACATTCGCACCATAATTATTACATAATTAACCAATTTAATTAGAAAGAGCTATGGGGGAATTGCAAGTTTTGGTTGTTCTATTCATTTTCTAGAGTTATTCAATCATAATTGAGTGGATTCTTGACACATTCAGTCAATTCTCGCT # Right flank : AAAAAAAGGGCCGTTTCGCAATGAAACGGCCCGTACTATGAATCAATGGGATTGTTCCTTTAACTGCGTGATAATCTCCAATGAAAAGCCCGTGACTCTGGCGATCAATTCTGGATCCAAATCTTCGGCGAGCATTTGCTTGACAACTTCTTTTTTTGCTTCACGCTTACCTTCTCTTCTGCCTTCGCGTCTACCTTCACGCTTAATGGCATCCAAGGTTTTTTCAAGCCCCATAACCGATACGCCTCCTTTTACGTTTTGAATAAGCTCGCGCAACTGTGGTTCATTTTCCGGCAATTTCTGACTTAATATATTCGCCATCCAGGCGATTAATTGCTGTTGGCTGTCCTCTGGCAATTGCTGTATCGTATGCATCAGCTTGCCGAGCCGATTCAGTAACTCCGTCTGATCCGCCGTCTGATCAAGCAAAAAGACAGAACCGATCGTATTGGAAAGAGCCAACAACTCTTCTTCTGTATATCGAGCAACATCAATAAGGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2524060-2522102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041405.1 Paenibacillus thiaminolyticus strain NRRL B-4156 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2524059 32 100.0 34 ................................ CCCGTTATCCATATCGCGTTACGATCCGCACATG 2523993 32 100.0 34 ................................ GACTAATTAACGACAGGCTCGGGTATGAGGCCGC 2523927 32 100.0 34 ................................ GCCTATTTCTGCCTTCCGGTTCACCTCGCGATAT 2523861 32 100.0 35 ................................ ATTGAGTAGGTGCATCGCGGTCATCGTATCCCACG 2523794 32 100.0 33 ................................ ATCTCTTTGCCTGGACTGTCGTTGTCCGTGAAT 2523729 32 100.0 35 ................................ GTACCCATTCGCGAGTAGTGCTGTGGCTACCCGCA 2523662 32 100.0 34 ................................ TCGTCGCCTGCAACGGTCTATCTCGCGCTGTATA 2523596 32 100.0 33 ................................ AATTCGACGACGCGCGAGGTATTACGCGAATCA 2523531 32 100.0 36 ................................ GATATCACATGTTACGATGAGGCACCGGAGTTTCAC 2523463 32 100.0 34 ................................ GTACTACCTACTTGGAATAGATTCATATGAAATC 2523397 32 100.0 32 ................................ TCCCATATCCGCGAGCTATAGTCTGATCCCGC 2523333 32 100.0 36 ................................ AACTTCGTGTATGACTATCAGGCAAAGGAGTTCGGG 2523265 32 100.0 35 ................................ ATACCTGCGATTTCGGATTGGGCATTCGACGGTAA 2523198 32 100.0 35 ................................ ATCCGGAACCTCAAGAGCACGGTCTGGATGATTAG 2523131 32 100.0 34 ................................ ATCGATGCTCAAGCTATTGGCCGGAATGGATTCC 2523065 32 100.0 34 ................................ TTAGCAGGAGGCTTTCGTTTTGCCACCATAGATT 2522999 32 100.0 34 ................................ ATATTGAATAGGAAATAGGGTAAGCAGCTGCGAA 2522933 32 100.0 34 ................................ GCTCCAGGAAGAAACTCATTGAACAGTAACCACT 2522867 32 100.0 34 ................................ ATGAAGCGAGACGGGAAACCATTTCCGCTTAGGG 2522801 32 100.0 35 ................................ CTATGACAGCAGCGTGGTTATTAATCCGTCCTATC 2522734 32 100.0 34 ................................ ATGTATCGCAGACCCGACGCTTTCAGACCGCCCT 2522668 32 100.0 37 ................................ GTCGCTACGGCAGGAACCATTATGGGCGAGTTTCAAC 2522599 32 100.0 34 ................................ ATTAGGCGTAGATCTAATCAAACTGACATCCGCC 2522533 32 100.0 35 ................................ CTCACGAACTTTTGCTTTTTTTCGTCCCAGACATA 2522466 32 100.0 36 ................................ AAATGACCATGTGCCAACATGTTCGAATCCCCGCTG 2522398 32 100.0 35 ................................ GCAATGACATCGAGAATACCCGCATGAATCTGCCG 2522331 32 100.0 36 ................................ TTGCGTATATATCAATTTTCCATCTTGGTACAGTTC 2522263 32 100.0 32 ................................ AATACGACGGAACGGAAGGCAGTACGCGCATC 2522199 32 100.0 34 ................................ CATTAGGATTTGGATTGCTGACGCAATCCCCTGG 2522133 32 78.1 0 .............A...C..T.AT.....T.C | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 99.3 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TTCTTTTTCCAGGGAAATGGGTCGGAAGGTTCACGGGTGCCGATGCTTCCGGTTCAGGTAGTAGGGTGAGGCTGTTAGTGCTTATCGAGTTAGTGTGGGTACGGAGGAAGTGCCCGTGTCGCTGTTCGCTGGTGGGGATAGACCTTGCTCACTCCTTATAAGCATTCTCCCTTCGGCTCAGAAAAGCAATCTTTTGCTTAAAACCGATGTAGAAAGTTAGTGCAACACATGTAAGCATGATATACTCAAAATCAGGGCAAAAGAAAATAACAAAATGGTTTTTATTTTTATTATTTAATAAAAAGCCCATTCTGTGGCAAGTGCGAATGTGGAGTGCATATGAAATTCCCGGGGGATTCGCACCAATTTTATTGAAATATTATCCAATTTTGTGATGGAAGTTCAATGGTTTGAAGACTATTTCGTGCTTAATCGCTCACTTGGTGTGAAATTCATGTAAGAAAATGTTTATATTATTATATATTGTGTTATTTTTCGCT # Right flank : CGATTATATTCCCTTTCTCAACTGTAAAGGACACATCTACAGGCGGTTTCGGCAACTGCTGTGGAGATGTCAGGCGGGATAGTATTGCCATAGGTTTGCAAAGGGGAAACCTCGCTTTAAAAGCCTCTCAGTCGATTTGAAAAAATTGAATATTATGGTAATGTGAAAATAAAGATTTCTTGGAAGGGTGAGGATATGGAAGCATCGTCGCTACAATATTTCACTATTGGCGACAGCATAAGACAATACAGAAATAAAGCCAATCTAACGCAAAGCCAGCTTGCCGAGTTGTCAGGCGTCAGCACAGGCTATATCTCTAAAATTGAAAATGATGAGGTAGAGCGTCCTTCATTTGAAAAAGTTTGTCACATAGCTAAGGCATTACAAATCCCTATTCATGAAATCGTCCAACCTTATCTTGAAATCAGGCAAAAATCCAATGTTTTGTTCGGAATCTTACGAGAAGTGATCAAGGAAGATGCGACGGATTTAATTGTTGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 5769876-5771562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041405.1 Paenibacillus thiaminolyticus strain NRRL B-4156 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 5769876 32 100.0 35 ................................ CCTTTCGGGAATACGATCCTTCCCCCTGCAGCTGC 5769943 32 100.0 33 ................................ GGTCATGTATCTTTTTTCGATGATCAACCTTTC 5770008 32 100.0 34 ................................ CTAGTGTTTATGATTACAGTGCGAGGAGGAAGAG 5770074 32 100.0 34 ................................ GATCATAACTTCCTGTGCTGTTTGGCTCATTTTG 5770140 32 100.0 33 ................................ ATATAAACAACTCGCAAACAAGACCGCGTTGTT 5770205 32 100.0 34 ................................ GATAATGATAAAGCCTTGGAGTAATCCGGGGCTT 5770271 32 100.0 34 ................................ ATCAACGTGGACATCGGGACCGGCCAAAACCATT 5770337 32 100.0 35 ................................ AAGATGGTCGGTTGGAAAAATAAAAGGGGGGTCGG 5770404 32 100.0 33 ................................ CTTGCCTTGTTTGTGATAGTAGCCATCCAGCAG 5770469 32 100.0 35 ................................ CTGCTTGAAGCTGACATATCCTTTCCCGCAGAGCC 5770536 32 100.0 33 ................................ GAAGTATGCCGAACGTTATAAAATTCTCCAGGA 5770601 32 100.0 33 ................................ ACTTGAAAGGTATATGGCAGGCTCAGGTAATAA 5770666 32 100.0 34 ................................ CGTCAAGAAATAAAAGTGCCGCCCCCGAAGGAGC 5770732 32 100.0 34 ................................ TATTACCTTAACTCTGATGCGTTTTTGTATTGCC 5770798 32 100.0 33 ................................ ATCCAGAGGTTTAGGCTGTCCGTGATGGCCTGA 5770863 32 100.0 35 ................................ GCATCTTCGTTAGGGTGGTCGGCCGGAGCTCCAGC 5770930 32 100.0 33 ................................ CCATCCGGACAAACTGGTTATCGAACGGGTTCG 5770995 32 100.0 34 ................................ TACGCGGACGGTAGCCGCGCACTGTGGTTCGATG 5771061 32 100.0 35 ................................ CCGGGCGTGAGCATCAAACGTGGCGATGGGGCAAT 5771128 32 100.0 36 ................................ CTGCGAGGGAGATTGAAATTTGGAGGTGCCAAGCAC 5771196 32 100.0 34 ................................ TTGCGATCGTGTGGCTGCTGTTTATTGTCCGTGT 5771262 32 96.9 35 ............A................... GGAAATGAATGGAGTGAAGAATATGGACAGTAGAA 5771329 32 96.9 37 ............A................... ACCAGCGGTGGCCGGGATGACATCAGCGCAACTCAAA 5771398 32 93.8 35 .........C..A................... CCCATAACCCAATGCCATTTGCCGTGCTTCGTCTT 5771465 32 93.8 34 ...........TT................... CGTGAACTGTAACCTGCACGGGTCTGAATTCCTT 5771531 32 87.5 0 .....T.T......A......C.......... | ========== ====== ====== ====== ================================ ===================================== ================== 26 32 98.8 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GATTGGGGGAGTTGCGGTGACCTCGTTCGAACGGGTGGAGCCTTGGGACAGGAGTCCTTTTCCGATCCTGGCGGCATGGTTCGAGGATGAGGAAGCGAGTGCGGGAACGAATGGACGGGATATTTCGGGTCGAAATGGTTCGGTAACACGTTGAGCAATGACGTTGAGCAATGAAACCCTGTACGATGTGAATGAATGCACGAAGTGATGGAGCGTTGCATATACGGACTCAACAAGCACTATATTATGAAACTGCAAAATGTGGTAACTTATAGATATAGATTTAACGATAGAGAAGCCCCTCATGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATAGAATTTCTATATTTTAGGCAAAGTCCATTTTATGGTTTGTTGTAAAGTGAGAAATGACCTTCTTTAAATTGATTCTATAGCTAATTTGATTTGTTTACTCATAAGAAGAGCGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : TGTGGACCTCTCTAAGCAGTCAAGCTCACATTGAGCGTCGCATCTTGCACCGACGCATAAAAACCATTATGAAACCAAAAAAGCATCTACCCCCTTATCAAAAGATGACGTGGGGGTGGGATGCTTGTCTTTTTTATAGAACATACGTTCCCTGACAGGTTGTTGTCACTTTCTTCAATCATAATAGAATTTAGAGTATCAATACGTAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGTCTTTTCTCTGCATTGAAGCGGACTGCACTGACAAGCATTCCTATCATTGTTTGTTTGATGTGGTTGCCCCAATGGAAGTGGATTATATATGCTTCTGCGGCTTATCTTTTGCTTCATTGGAGCAAGGACTTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCCGAAGAAGTTACGTTCTGACAAGGGAAGAAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 5783304-5785644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041405.1 Paenibacillus thiaminolyticus strain NRRL B-4156 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 5783304 32 100.0 34 ................................ ATAAATGGCGCGGACAACTTCCTCTTTGTCGTAC 5783370 32 100.0 33 ................................ TTCGGTCGTCAGGCCCTCCATCGGGTTGTTTAC 5783435 32 100.0 34 ................................ ACGTTAAGCCCTCCTTATTAAGAATATTTGGCTT 5783501 32 100.0 34 ................................ ACGTCCATGCTGCCGCTGTGCTGGATGTCTTGCT 5783567 32 100.0 36 ................................ AACGCTGGAGTACGCACGCCAACTGGTCAAAGAAAA 5783635 32 100.0 34 ................................ ATTATTCGGAATTACATCCCGAGCCACTAACTGA 5783701 32 100.0 36 ................................ TCGTGGTTAAGACCACACGAAAAAAAGAAGGGGACA 5783769 32 100.0 32 ................................ CTCTGGCGTCATTTGCCGCTCTACAACCTTGC 5783833 32 100.0 34 ................................ CGTCGATGCTCTTTGTGTCGCTGGGCATTGTGTA 5783899 32 100.0 33 ................................ TTCCGGCAGGCGATCCGCCTGATGCAAAAATTA 5783964 32 100.0 34 ................................ ATCTACGCGATGACACCCATTTCATTTCTATTCC 5784030 32 100.0 32 ................................ GCTACGCCACACCCACGCCGTCATGTTGCTAG 5784094 32 100.0 36 ................................ AGAATTTGCCACAGAACAAAATCGAAGACCTGGCAC 5784162 32 100.0 35 ................................ ATTTAAAAGTGGGTGAGGGAAGACAACTAGCTGGA 5784229 32 100.0 33 ................................ GTTGATAACGCTGAATCTATTATCAAGTATCAG 5784294 32 100.0 33 ................................ TTAACATGGCCGAAAGGGCCGGTACCTCAATTA 5784359 32 100.0 34 ................................ ACAGTTAACACAAAAGCTCAAAGGCGGGAATCAT 5784425 32 100.0 34 ................................ CAGCAAGTGTAGGCATTTACGTCATCCTTCACGA 5784491 32 100.0 33 ................................ TCGCGGTATATGCGGATTAGATAATCGATCGCG 5784556 32 100.0 35 ................................ TGGTACTTTGATGCGCTGATCACATACATGACATT 5784623 32 100.0 33 ................................ ACCATATTCTAACGATTGATACCGCAAGATACC 5784688 32 100.0 35 ................................ TCTTTTGGTTTCGCCATTCCAACCACCTCGACTTT 5784755 32 100.0 33 ................................ ACTTGCTGTTCATCTTGATGATCGCAAAATCGC 5784820 32 100.0 35 ................................ TTGCAATCTGAAAACATACAGTGTTGGCTTACCCC 5784887 32 100.0 35 ................................ ATTTATATGATGCTTGTTAGAATTATTGCGGACAG 5784954 32 100.0 34 ................................ TTTATTAATTGAATCATTAATGGCAGAGGGTATT 5785020 32 100.0 33 ................................ AGAATCGGATGAGCAGCTTAGAGTGCTTCCAAC 5785085 32 100.0 33 ................................ CCCATGCGTGGGGCGTACATCTTCGACCACTAT 5785150 32 100.0 34 ................................ AGTCCCCTGGATGGACTTTATGTAAGGGGTTTTT 5785216 32 100.0 34 ................................ TTGACACAACGGTTCCCGCTACTGACACCTCTAA 5785282 32 100.0 34 ................................ TCGATGCTGCTGCTTACAATCCCACGCAAGGCCT 5785348 32 100.0 34 ................................ AATGCGGCGCAAAATATCAGCCATCATCATCAAC 5785414 32 100.0 33 ................................ GCTAGATGCTCGTATTGATGATCAGGCAGCTTG 5785479 32 100.0 33 ................................ TTCCGGCAGCCGTACGATAAGCGCAGGATGATT 5785544 32 100.0 34 ................................ GAAATGCTCCGGCCAGACCTTGAGTTGATGTTCG 5785610 32 84.4 0 ....................A..T.A.A...G | ACC [5785632] ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.6 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTCTGGAAGTAGGTGGTATAATTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGCATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAATTCGCCAGCTTGAAGATCCAACTTATCGATATGATTGATGAAAAGGAAGACAGCCTGCGATTTTATCAATTAGGAAATAACTACAAAAGCAAGTTGGAGCATGTCGGCGTGAAGGCATCGATCGATATGGAAGGGACGCTAATCTTTTAGTGCGAATGTGTAGTGCACATGAAATCCCTGGGGGATTCGCACCATGTTTTTTCTGTATTATGGGTAATAACCATTTTGTGGTTCGTTGCGGGAGTGAAAAATGACCTAGTTTATATTGATTCTAGAGCTAATTTGATTAATTGAATCATAGTAAGAACGAAAAATGATTGTAACAATCATTTTTCGCT # Right flank : GCCCGCTTGCGAGAAAATTAACTCACAAAGTCAGCGGAGCCGCATCCCCCTATTACTGCGCCTCTGCCGCAGATTTTCCCTCTATCCTCATGCCTAACGATCACCTCCCACCTCCCTCCACCCAAAAATACAACGACAGCTTTCTCCGTACATGCACTTCTGGGCCATTGCCTACATACAATGTATCACTGCGCCGGGATTCGGCTTGCTGCGAGGAGATACCGCTAGGCGCAAGACGCAGAATAGAACGTTGTCAGACTCCTGGAGGTGGCTAGCATGACGGGTTTATTTGCTGCAATCGCCGTGTTCATCAAGCAATTGACGCTACTTGTATCCTACGTCAAGAACAATGCGTTTCCGCAACCGTTGGCGGAAGAGGATGAGATGAAGCATTTGCAGCGGATGGCGGAAGGCAATGCACAGTCGCGGAATACGCTCATTGAGCACAATCTCCGCCTGGTTGCGCACATCGTGAAGAAATTCGACAACACGGGAGAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //