Array 1 24-783 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZT01000091.1 Acetobacter tropicalis strain LMG 1663 LMG1663_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 24 32 93.8 34 TA.............................. AGTTGGTGTGGGACACCGTGACAATTCCGGCGCG 90 32 100.0 35 ................................ AGTTGGTGTGGGACACCGTGACAATTCCGGCGCGT 157 32 100.0 34 ................................ CAGAAAAACCTACAGGATCTTTGCGACAAAACAT 223 32 100.0 33 ................................ AGCTGGTGTGGGATACGGTAACAATTCCGGCGC 288 32 100.0 35 ................................ TGATTATGGGAGCATCAAGGCTGCAATCTTGCGCC 355 32 100.0 34 ................................ ATGGCACGGTAATCGTGCAATGTTTTGCGCCAAC 421 32 100.0 34 ................................ AAACACGGACATTATGAAGTCCGGGGTAAAAGTC 487 32 100.0 34 ................................ TGCCTGAATGGTAGCTATGCCACTCTTGATGCTG 553 32 100.0 35 ................................ AAAAATCAGAATAGCCAAACAATAGGTTACGCATT 620 32 100.0 34 ................................ AATACCAGCAAGAGGTTGCTGAAAAGCAGGCGTT 686 32 100.0 34 ................................ CTGTGGATCGCGACCCTTCCCGATAAATCAACAG 752 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ =================================== ================== 12 32 99.2 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : CAAGGCGTCTCACTCCGGAAGCTT # Right flank : GTGCCTGTTAATAAGCTGTTTCGCTCCGCTTTGTGCGGATCGGTAGCCGGGGGAGGGCGAGTCTTATAGTGCCGTTGTGGTGGCGGGTGCTTTCTCTCCCCTGTGGCCGTTTTCTGTATTCAGGAAAACACGATTGTGCGGCGGCCGTTTAGCATAACACGTTGTTCCACATGCAGTTTTACCGCGCGGGCCAGAACTTGCGATTCAACGCCCCGGCCTGTGGCAATGTAGTCCTCGGGGGAGAGGTTGTGGGTGACGCGGGCGGTTTCCTGCTCAATGATAGGCCCTTCATCCAGATCAGCCGTTACGTAATGGGCCGTGGCGCCAATCAGCTTTACCCCGCGCGCGTAAGCCTGATGGTAAGGGCGTGCGCCCTTGAAGGAAGGCAGGAAGGAGTGGTGGATGTTGATGATCTGTCCGCTCAATTCAGCGGAAAGCCGGTCAGAGAGCACCTGCATGTATCGGGCCAGAACAATCAGGGAGGCCCCTGTTTCCTTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1758-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZT01000108.1 Acetobacter tropicalis strain LMG 1663 LMG1663_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1757 32 100.0 34 ................................ TTGACGCCACCCGCAATGCTGGCGGATCCGGTCT 1691 32 100.0 34 ................................ GTCAGCCAGAATACCAAGTTCAAATGCCGTAAGT 1625 32 100.0 34 ................................ GCAGAAAATGAGGCTCAGGCTTATCTGTTTGGTG 1559 32 100.0 33 ................................ ACTGTTAGCCAGTCGGGATACCAGCTCATTGTG 1494 32 100.0 33 ................................ CTACAGAATAGAAGAAATAGATGGACGTTGCAA 1429 32 100.0 34 ................................ TCCAGCCATCTCAGGCTTCACGATACGAGACAGA 1363 32 100.0 33 ................................ GTCTGCTTTTGCAAGTGTTGCCGCAGAACAGGA 1298 32 100.0 34 ................................ TTACGAATGGACATTAAAAGCCTTTCAAAATGCT 1232 32 100.0 36 ................................ GGTTAAAGTGACTGGCGCTGACTCTGAAATACTGAG 1164 32 100.0 35 ................................ GTCAGCGATAGAGTCAGAGGAGGCCATCAGTTCAA 1097 32 100.0 34 ................................ CCTTTATAGCCGCTAATCTGCCAAAAGCGGACAC 1031 32 100.0 35 ................................ TTTCTGGAAAGACTTCCCTTGTTGACGCGGCAAAC 964 32 100.0 34 ................................ CCGAACGGAAGCAGAAGCCTGCGTGTTTGAAGCG 898 32 100.0 35 ................................ ACCCAAAACTCCCGCGCCACAGGCACTTCGCGGGC 831 32 100.0 33 ................................ TTTAACCTCACATGGAACCGTGGTCACCTTAGC 766 32 100.0 35 ................................ GCCAAGGTGGGAATAGTCGCGCTTGTCGATGAGGC 699 32 100.0 34 ................................ GTGACGAACGATGAAGGAACCGTTGGCATCAGCC 633 32 100.0 34 ................................ AAGTACCAAAGAGGCCGCTGCCTATCTAAATATA 567 32 100.0 33 ................................ TCTGTCCACCTACACTGGCGGCCACTCGGTTAT 502 32 100.0 35 ................................ TGGCCTTAAAGCAGGCCAGAAAAATGAAACCGTCA 435 32 100.0 33 ................................ TATGCGGCAGACGGTGGCTATCGTAGGAATCTT 370 32 100.0 35 ................................ CCGCAAACTGGTCTGTTGCACCCCCTGGCTCTGCC 303 32 100.0 33 ................................ TTATTGGAGCGATACAATGGCAACGGGTGCCAC 238 32 100.0 33 ................................ TTGTCAGTGGTCAGGATGACAGGAGGCTGGCCG 173 32 100.0 35 ................................ TTGTTCGATCCTGTTACGCTCCTCTTGCGCTCCAG 106 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : AGGTTGGTTGGGGGCACAAGGTGCAGAGTATGTAACAGCGTATTGCCACCCGCGCCGAGCACCAGCAGGACCGCATAACACAGCAGGCAGATACGCCAGTTGACGAGAGGCTCCCGCACAACATCAGTTGATGGCGGAAAGGATGAGGCGGATGCAGTATATAATCCGGGTGGTGTCGTCATTATAGTATGCTACCACCATGAAATCATGCTGTGTGCGACAAAATAGTGTGGCCCAGGTAGGAACGACCATGGCCACCTTATAGCTGACCGCTCCCTATTCCCTGCACGTAGCTATACTGCCCACCTATTTGCGGCAGACCAGCGCGAACCCCAATCACCTCTTAAAACCCCGCCAGGTTCGCGCAACCCATAACCCTTTAAAACAAAAAGATTTTCTTCCAAACCGCCAGATGGAAGCGTAACAATTCCCCGCTTTCCACACAGGTTCGCGCACACCCGCACATTCCCCCAGTCTTTTTCTGCTGCTATGCTCCCACC # Right flank : CTGCCGCCGGGTTGTCTGGGGCTCCGTCCTCTCTGGTCGCTCCCCGGTAAGCATCCGGAGAGAGGCGCGTGCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25643-24888 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZT01000117.1 Acetobacter tropicalis strain LMG 1663 LMG1663_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 25642 32 100.0 33 ................................ CAGTCCCCAGGCGAGATCCTGCGGGATGGTGAC 25577 32 100.0 34 ................................ AAGAAGAACGGCCGAAGCTGGATGCCGCAGGGAA 25511 32 100.0 33 ................................ TCACGCGGCCGCAGGTGCTCGCCATGATTGCGG 25446 32 100.0 34 ................................ TTTGCTTATGCGGGATGAAAAATGGACCTCCTGA 25380 32 100.0 33 ................................ GGGTCTGAGTTTGGCGGTGAGGGATGGAATTTT 25315 32 100.0 35 ................................ TGGATGTGTATAGCAATGTCGGGGCGGCCAATAAC 25248 32 100.0 33 ................................ TTGGACGTGATCATCGGTTCGCGCCCCGCCAAC 25183 32 100.0 33 ................................ TGGGTATTGGCCTGTGGATCGCCTGCCTCAAGC 25118 32 100.0 33 ................................ AGCGGAGCGTTGCCAATAAAGACAACGCCAACC 25053 32 100.0 33 ................................ CAAGCTCTTGATTGAAAACGCCCGTGATCCGGG 24988 32 96.9 35 ........................G....... TGACCAACCCAGCACCATGAGACACTGGAATAGTC 24921 32 87.5 0 .............T...G......G......T | GG [24900] ========== ====== ====== ====== ================================ =================================== ================== 12 32 98.7 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : CGCCAGATTCTGGTGGCCACCCGTGGGCGCGAACAGACACGCCAAAGCCTGCGCGTGGCGGCGGATGTCTGGTGGGTGGAAAGCCACTGGGTTATTCTGGAAATGGTAAAACACAATATAGGCTGGGCATTTGTCTCAGACCATGTGCTGGCGGCCTCTCCCACAGCGCCGGATATTGTGGCCCCCAACCTCCAGTTCGATGCCGGAGAACGCCTGACCCCTCTTGTCACTGTGTGGCACAAGAAGCATCCTCATGGTCCTGCCGCCCAATGGCTCCGCAACCGCCTGCGCCAGGGCGGTATTCCCGGTGTTACGCATCCGTCGCGCGAACCCTGATCACCCATCAAAATCCCGGCAGGGTCGCGCACGCGTCAACTCATTATAAAATAAGAATTTTTTCAAACACGCTGATCCCAAAGCGTTCAGCTGAGCACTCGCAGCCACCAGTTCGCGCAAAAAGCGCATTCCGCCTAGCCCCAGACAGGTGCTAAACTTACAGC # Right flank : ATGGGGGGAGAGCACGAATTGGTCATGTTCTCTGGCGGGCCGCATGCAGGCGCGTTGGCGTAAGCCGGGAGGAGAGAACTAAAGCTCTTGCGGGCTTCAGGGCATCTATGCGCAGAGTGGAGGTAAGGATTGCTTAATAAGCAATGGTGACAGGTCATTCTGAATGATTACATTTTATTAAGAATAAGTGATACCTGAGGGGAAGGAAGGTCAGTGGTTCTTTACGCGCACTCTCTCCCTGCCCCTGCAGACAAGGCGCGATGGGAACCTTTGCGAGAGCATCTTGAGTGTGTCGCGCAAAGAGGGGCGCTTTTTGCACAGCCATTCGGACTGGCCATGCTCGCGCGGGCTGCGGGGCTTTTGCATGATATTGGTAAAGCATCTGCGGCGTATCAGGCTTATATCAGTTCAGAAGTCAGCCAGAAGGGACCAGATCACAGCACGGCGGGGGCACGTGAGGCTGTAACGTTATATGGCCAGCAACTGGGGCGTTTACTCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //