Array 1 2607936-2608444 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018515.1 Acetobacter orientalis strain FAN1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2607936 28 100.0 32 ............................ TGTCCGTAATCAACACGGCGCAAGGCACCCTG 2607996 28 100.0 32 ............................ GGACACGATTGCACCCGCAGGATATCCGCCGA 2608056 28 100.0 32 ............................ TAGACCGCGCGTAAAGTTGGTCAGCGGGTTGT 2608116 28 100.0 32 ............................ ATAAGGCCAAGCGCACCTTCGCCCATGCCGAT 2608176 28 96.4 32 .........................C.. GGCGCAACGGGCGCAACATGGCAGAGCCTGTT 2608236 28 100.0 32 ............................ ACCCAGCGCACCAAGGGCCGCACTGTCGATGT 2608296 28 100.0 33 ............................ AGAGGCAGCGCTGGCACCGATCAGCGTGCCAAA 2608357 28 100.0 32 ............................ CAAAACTCCCGCGCCACAGGGACTTTGCGGGC 2608417 28 78.6 0 T...................T.T.T.TG | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.2 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : GGCTTATGGAGCGCTTTCTGTAGGCGAATTGCTTATTAGCGCGCTTGGCCTTGCCGTGGTGGCCCGCTATGTGCCGCTTAATATTGGGGCCTTTATGATGGGCAGCTACTGCGTGTCTAACGGTGTGGCTATGTACCTTGGCAGCATGGTGGCCAATATGGCTGCTGTAAGCGGTGCTGTTGGGGGCGAAACAGTTGCCGCAATGCTGCCTGTGTATGCCAGTTTGTTCCGCTCTCTCTTCTTTTTAGCTGTAGGGTGCACGGTGGTTTTTGTGGTGTGCCTGCCCTTTACACGGCGGTGGGACGCCCAGCACCATGCAGCACTTGGCATTAAAGCTGGCGCAAAGGGGTAAAGTTTACCCCTAAAATACCCCTTTTTTTAGAGCCAAAAATAATCTCTTTAAAATCAGATACTTACAAAACGGCTTGCAAAAAGGGGTAAAAGCGCCAAAATAGGCTGCAAGACGCACAAAACTGCTCTTTTATAACCATATCAGTCTA # Right flank : GTGTTGTTAGGGGCTTTTATTGTCTGTTTAGAAAGGTGTAAGCGGGCGAGTGGTGGAGCTGAGGGGAATCGAACCCCTGACCTCCTCATTGCGAACGAGGCGCTCTCCCAACTGAGCTACAGCCCCGCCTGCTTTATTTTGCGTGTACAGAGCGGGGTAAAGCCCTGTCAAGTTTAGGTGGCATGCGGTAAACCGGTTAAACACACGGCATACTCTTATTGCAAAGGAGCAAATATTTGCTGTTTAGCCTTTATATGGTGCTAACGCGCCTGCTGGATATTTATTGCTGGATTTTACTGCTATCGTGCATTTTTATTAATTTGTGCATGTTTGGTATTTTAGACAGCCGTAACCAGCTTGTTTGGAAAGTTGGTGTGTTTTTTAGCCGTGTGACCGAGCCTGTTTTGGGGCCTATACGGCGTATGCTCCCTAATTTGGGAGGGGTAGACTTTAGCCCCATGATTGTGCTGCTGGGCATACAGTACATTGTGCAGCCTTTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2982728-2982518 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018515.1 Acetobacter orientalis strain FAN1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 2982727 28 100.0 35 ............................ AAAGGACGCCATCATGATGGCGCAATACGCGCCGA 2982664 28 100.0 32 ............................ CCCCGGAAATCCGCCAGTTCCGGGTTCGCCTG 2982604 28 100.0 32 ............................ AATGACAAGCGATTGTTTACAAAAATTAATGA 2982544 27 92.9 0 .........-..........T....... | ========== ====== ====== ====== ============================ =================================== ================== 4 28 98.2 33 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : TTGTGGCTGGCACCCCCCTACCCAGCCCTGTTACGGCCTGATAGAAAAACCACCCAGCACAAAGCTGCTGTGTGATAAGGAGCACACCCCATGCAAATGACACTCCGCCTTGCCTGCCTTATTGGCATTGCCCTTGCAGGTGTGCTGCGCTTTGTAGACCCACATTACCACCTTACGGCAGAAATTGTGGGGGCCGGGTTTTTAATAACCGCTCTGGTAGCCACCGTCATATTAGACGAAACAGCCCCGGCCGGTATTTCAGCCTCTAAAAAATAACTACTTACCCTGCCCCAAAAGCAGGGGCTAACACGCCTTAAAACTGGCTATTCTGCACAAGCCTAGCTACAGTACCTAAACAAACCCTTTTTTGACCCTTTTTAAAACACCCCAAAAAGTTCTTTGAAAATCAAAGCCTTAAAAACCACCCTCAAAAAAAGGGGTAAACGCACTAAAACCCCTTAAGCCTTTGTTTTCTTAAGCGTATCTCTTTTTCCCTTCTA # Right flank : GCAATGGCTCAAATCAACTAATAGTCGAATGTACCTGACTTAAAGCTTAACAAAGACTTGAGAAGCATAGAAAACTGAACAACACATACTTTAGCGATGTACACAATTTTTAAAAAGACTACATTTTCAAGAGGGCACAAGCCCTTTGAATTTTCGTATTCGTAAATACTGCTCTTAAAAGCAATTCTAGTCACTCCATAAAATTAATAAATATTTATTTGGATAGCCTTATGATATCTCGCATTCTTGAAAATCAAGCTTCATTGCGAGGAACGATTACACTATGAAAACACGAAGTTACTTTATTCTTCTCAATATAAAAATAAGATAACACAAAATGCACAAAATATACATAAGTACGATAATAAAATTAGCAAAATATAAAACCCTTATCACCTTTTATGCAATTTTTTCAATAATTAATGGACTACTTTGTATTACTCTCACCCCCCTTTCAGGTGGCAGATGAACCCAACCATTTCATGCGTGTATTACAAATA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //