Array 1 5254-6746 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXT01000073.1 Salmonella enterica isolate STY49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5254 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5315 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5376 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5437 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5498 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5559 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5620 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5681 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5742 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5803 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5864 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5925 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 5986 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6047 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6108 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6169 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6231 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6292 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6353 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6414 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6475 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6536 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6597 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6658 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6719 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8903-10867 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXT01000011.1 Salmonella enterica isolate STY49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8903 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8964 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 9025 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 9086 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 9147 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 9208 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9269 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9331 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9392 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9453 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9514 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9575 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9636 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9697 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9758 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9819 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9880 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9941 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 10002 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 10063 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 10124 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 10186 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10289 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10350 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10411 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10472 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10533 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10594 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10655 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10716 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10777 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10838 29 96.6 0 A............................ | A [10864] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //