Array 1 44468-43246 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYJ01000059.1 Bacillus cereus strain AFS004748 AFS004748_110_C1_Contig59_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================================== ================== 44467 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 44401 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 44335 32 93.8 32 .C..................A........... TCTCAGGGAAATTAAATCCCATGCTACCACCA 44271 32 100.0 35 ................................ TTTTTCATTAAGAGCATGTGGTTTGAAATATTGAA 44204 32 100.0 35 ................................ AAGATAGTAAAGGTAAGAAAATTAGTGAACACAAA 44137 32 100.0 35 ................................ CAATCTTGGGTAGAGGTGAACTGGATGAAAAAAAT 44070 32 100.0 35 ................................ ATTTTGGTACAGGATTTGCAGCAGGTATTGGAGAG 44003 32 100.0 34 ................................ AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 43937 32 87.5 33 ..........TG..G......A.......... GATAAAGGGTTTGCAATCATAAAAGATATTGTT 43872 32 90.6 36 ...A......G........A............ TCTGAGGGGACACCTTATATGGAAGAACTAAGAGGA 43804 32 93.8 33 ...A...............T............ TATAAAAAAGAAGTATGTTGATTTAGTTAAGCA 43739 32 93.8 35 .........G...A.................. TCAATACATAAATCCAAAAAACTAACAATCGGGTC 43672 32 93.8 35 ...........C....A............... ACAAATGAACGTGTAACAAATGGATTTTTGCTACT 43605 32 93.8 33 ...........C...C................ TATATTGGTCGTACAGTTAAATTAAATCGTCCG 43540 32 90.6 33 ..................AT...A........ CACCCAAATATCGGAAAATTATAGAGTTTTTTA 43475 32 81.2 100 ....T....CT.T......T..T......... CTCAATAGAAATTGTGGAAGTTTGAAACACAAAAATCAAACCCCTTATAGGGGTATGGATTGGGATTTTTGTCATCACATCGTATTTACTGTACATGCTG 43343 32 87.5 33 C.........T..AT................. CCGTTAACGAAAATATAAAAAGCATACGTGCCG 43278 32 75.0 0 ....T....C.......CA....AG...G.C. | A [43251] ========== ====== ====== ====== ================================ ==================================================================================================== ================== 18 32 92.5 38 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : GGTAAGATGCTTGATATTAATTTAGTGCCTCTGCTGGAGTAAGTGGCACTGCTTCAATTCATACAGCAACTAGTGTTGAACCAATTGACATTACTAGTATGCAGATTACGAAAAGTATAAATTCTGATCCTGAGAAGGATAAAGTTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATTTTTTATGGAAGTATTCATATGTAATAAGCAAGGAGACAGATTCACCAAAGGTGATGCAGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCATGCCCTGAGGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAAATTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATGTTAAGCGGAACATTGACAAACCAAAAATAATTGATGACTATAACATTTTGGTAAATGAATTAGATATTTTAAAAGTGGCGATTATTGATGGACT # Questionable array : NO Score: 8.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 52336-50722 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYJ01000059.1 Bacillus cereus strain AFS004748 AFS004748_110_C1_Contig59_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 52335 32 100.0 34 ................................ ACCTTGGATGCGGCGTTGTGCTCCAAAGGAAGGT 52269 32 100.0 35 ................................ TGGTATTATGAGTCTCATATCAGAAACGATACCTG 52202 32 100.0 35 ................................ AATGAAATGGTTGGGTGATGTGTATATGGACCAGG 52135 32 100.0 33 ................................ TCAACATTCTGTTATCCTAAAATTAACAAATTT 52070 32 100.0 34 ................................ CCCAATATTGCGTCACTCCACCTCCACCGACTGC 52004 32 100.0 34 ................................ CGTTTCTTCCTCATCGTAAGAGCGTGTAACTTTA 51938 32 100.0 33 ................................ AAACCATATTCATGCAATAACAAACAGAAAAAG 51873 32 100.0 35 ................................ CACTTTTTGTCCATTATGCTTTAAAACTACTGTTA 51806 32 100.0 34 ................................ GCACCAGAGGGATATTTAATTAATGAAGAAACAT 51740 32 100.0 33 ................................ ACCTTGATCTCTTTGTACATCAGAAATAGTTCT 51675 32 96.9 34 .......T........................ CCGCACCCTTCGAAACAATAACAGTTGTTGTCTG 51609 32 90.6 34 .........C.A........T........... ATCATGTCAAAGGCCATTTGCACCCATTGAGGTA 51543 32 90.6 34 .........C...A........A......... GAAAAAACGCTTGATGACTTAATGCGTGATGAAG 51477 32 93.8 32 .........A..............G....... CACATTAAGAATTTTGGTACAAAGATTGTAAA 51413 32 100.0 33 ................................ ATGCCAATTGGTGTACAAGCGGACTTTATTAAT 51348 32 96.9 34 .........C...................... ATTTGGTAGCGCATTGTATATGGATGCACGATTT 51282 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 51214 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 51149 32 93.8 34 A..........A.................... CCCTGCTGATGCAACATCGCTACCTGCATTTTGT 51083 32 93.8 34 .........C..........A........... GAAAAAACGCTTGATGACTTAATGCGAGATGAAG 51017 32 93.8 34 ..A........A.................... GATGATACAGAAAAAATAGTACCAACAATCCGAC 50951 32 96.9 34 .........C...................... TCCAAGGGGGAACTGGGAGAAAGTAACTTAATGG 50885 32 96.9 34 .........C...................... GAATACGATTATCAAGATGAAAGCACAAAAAAAG 50819 32 93.8 34 .........C.........T............ TACCTCGGGTTTATATTTATCTGGAACGCTCATA 50753 32 96.9 0 ..............G................. | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 96.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATATCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAAAGAATTTTTAGTATTCAATATTTTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATTAACTTGATAGGTGGATAGAGAGACAATATGTAGTGAATTTTATTGTAAATTACGACTCCATATATTAAGGGTATTATGAAACTATACATTTTTGTTAATCAGTTAGGTAATAGCTATGAAAATAGGGTCGAACATATTGGTGTAAAAGAATAAATTGATTTAGAAATCTCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTTATACTTTATGGATTGAATTTATAATTTTTATAAAAATTACTTTACTAAATAAAAATATTTTTATACTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGG # Right flank : AGTTTAGTAGATACTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTACGAGATAAGCAATTA # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //