Array 1 253401-254405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACRYI010000003.1 Escherichia coli strain Eco04570 isolate Eco04570, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 253401 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 253462 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 253523 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 253584 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 253645 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 253706 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 253767 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 253828 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 253889 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 253950 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 254011 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 254072 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 254133 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 254194 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 254255 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 254316 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 254377 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 280104-281110 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACRYI010000003.1 Escherichia coli strain Eco04570 isolate Eco04570, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 280104 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 280165 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 280226 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 280287 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 280348 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 280409 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 280470 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 280531 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 280592 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 280653 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 280715 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 280776 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 280837 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 280899 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 280960 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 281021 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 281082 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //